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Takifugu rubripes
cluster # 1881 cluster # 1881       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1881#0 length = 460 sequences # 1  
 consensus_1881#1 length = 436 sequences # 2  
consensusID : consensus_1881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence 
                              [AACGATATCATGGCTTTCACTTTGTATTCGCTCATTCTAGCAGCAGTCTTGTGCGTCAATGCCGTCGCTGTACTTCACGAAGAAAGGTTTTTGTGTAAAATCGGTTGGGGAGTGGACCAAAGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGTTCTAATTTGATGTCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGCAGAATGTTTAAATTGACTGTCTAATAAATGGATGTAGTTTA]

[+] EMBL CA844744             [AACGATATCATGGCTTTCACTTTGTATTCGCTCATTCTAGCAGCAGTCTTGTGCGTCAATGCCGTCGCTGTACTTCACGAAGAAAGGTTTTTGTGTAAAATCGGTTGGGGAGTGGACCAAAGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGTTCTAATTTGATGTCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGCAGAATGTTTAAATTGACTGTCTAATAAATGGATGTAGTTTA]




>consensus_1881#0
AACGATATCATGGCTTTCACTTTGTATTCGCTCATTCTAGCAGCAGTCTTGTGCGTCAAT
GCCGTCGCTGTACTTCACGAAGAAAGGTTTTTGTGTAAAATCGGTTGGGGAGTGGACCAA
AGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGC
TCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTG
CTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTC
AGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGT
TCTAATTTGATGTCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGCA
GAATGTTTAAATTGACTGTCTAATAAATGGATGTAGTTTA

consensusID : consensus_1881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence 
                              [ATTGATATTGAGTTAAGTTTATGTTTGCGCTCAGCGATGAAGGTTGGGGAGTGGGCCAAAGCGTTGGGGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGGACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAAGGGTGACGTTCTAATTTGATGGTCATGGGGCACTTAGTATATTTTTATGGTAAAGGGCTCTACAGAAGCAGAATGTTTAAAGTGACTGTCTAATAAATGGATGTAGTTTAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGG]

[+] EMBL FR0057390            [ATTGATATTGAGTTAAGTTTATGTTTGCGCTCAGCGATGAAGGTTGGGGAGTGGGCCAAAGCGTTGGGGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGGACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAAGGGTGACGTTCTAATTTGATGGTCATGGGGCACTTAGTATATTTTTATGGTAAAGGG                                                                                         ]
[+] EMBL FR0057382            [   GATATTGAGTTAAGTTTATGTTTGCGCTCAGCGATGAAGGTTGGGGAGTGGACCAAAGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGTTCTAATTTGAT GTCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGCAGAATGTTTAAAGTGACTGTCTAATAAATGGATGTAGTTTAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGG]




>consensus_1881#1
ATTGATATTGAGTTAAGTTTATGTTTGCGCTCAGCGATGAAGGTTGGGGAGTGGGCCAAA
GCGTTGGGGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCT
CGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGC
TGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGGACAAATGATCTTCATCACCTCA
GGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAAGGGTGACGTT
CTAATTTGATGGTCATGGGGCACTTAGTATATTTTTATGGTAAAGGGCTCTACAGAAGCA
GAATGTTTAAAGTGACTGTCTAATAAATGGATGTAGTTTAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCGGGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1881#0      AACGATATCATGGCTTTCACTTTGTATTCGCTCATTCTAGCAGCAGTCTTGTGCGTCAAT 60
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      GCCGTCGCTGTACTTCACGAAGAAAGGTTTTTGTGTAAAATCGGTTGGGGAGTGGACCAA 120
consensus_1881#1      ATTGATATTGAGTTAAGTTTATGTTTGCGCTCA-GCGATGAAGGTTGGGGAGTGGGCCAA 59
                         *    **   *      *     *   *   *  *    ************* ****

consensus_1881#0      AGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGC 180
consensus_1881#1      AGCGTTGGGGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGC 119
                      ******** ***************************************************

consensus_1881#0      TCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTG 240
consensus_1881#1      TCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTG 179
                      ************************************************************

consensus_1881#0      CTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTC 300
consensus_1881#1      CTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGGACAAATGATCTTCATCACCTC 239
                      ************************************** *********************

consensus_1881#0      AGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGT 360
consensus_1881#1      AGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAAGGGTGACGT 299
                      *************************************************** * ******

consensus_1881#0      TCTAATTTGATG-TCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGC 419
consensus_1881#1      TCTAATTTGATGGTCATGGGGCACTTAGTATATTTTTATGGTAAAGGGCTCTACAGAAGC 359
                      ************ ******* ****** ******************  ************

consensus_1881#0      AGAATGTTTAAATTGACTGTCTAATAAATGGATGTAGTTTA------------------- 460
consensus_1881#1      AGAATGTTTAAAGTGACTGTCTAATAAATGGATGTAGTTTAAAAAAAAAAAAAAAAAAAA 419
                      ************ ****************************                   

consensus_1881#0      -----------------
consensus_1881#1      AAAAACCCCCGGGGGGG 436


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)