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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACAACGGGCCAGAGGAAGTATGGCGGTCCCCCACCTGAAGCTGTTCATTCAGGGGCTCAGCCAACCATCGGTACAGAGATATTTGTCGGCAAAATACCCAGAGACCTGTTTGAGGATGAGCTGGTTCCGCTCTTTGAGAAAGCCGGGCCCATCTGGGACCTGCGACTGATGATGGATCCACTCAGCGGCCTGAACAGAGGCTACGCCTTTGTCACTTTCTGCACTAAAGAAGCTGCACAGCAGGCGGTGAAATTG]
[+] EMBL BU807914 [CTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACAACGGGCCAGAGGAAGTATGGCGGTCCCCCACCTGAAGCTGTTCATTCAGGGGCTCAGCCAACCATCGGTACAGAGATATTTGTCGGCAAAATACCCAGAGACCTGTTTGAGGATGAGCTGGTTCCGCTCTTTGAGAAAGCCGGGCCCATCTGGGACCTGCGACTGATGATGGATCCACTCAGCGGCCTGAACAGAGGCTACGCCTTTGTCACTTTCTGCACTAAAGAAGCTGCACAGCAGGCGGTGAAATTG]
consensusID : consensus_1901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence
[AGAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATTTCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACCTCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATCTACATAGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACA]
[+] EMBL CA590058 [AGAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATTTCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACCTCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACATAGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCATAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAG ]
[+] EMBL CA589667 [ GAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATTTCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACCTCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATCTACATAGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1901#0 ------------------------------------------------------------
consensus_1901#1 AGAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAA 60
consensus_1901#0 ------------------------------------------------------------
consensus_1901#1 AATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATT 120
consensus_1901#0 -------------------------------------------------CTGGAGCCGGA 11
consensus_1901#1 TCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACC 180
* * *
consensus_1901#0 TCAG-TGCCGGGA---GTTTTACACTTTTCCTGTCTTT-TTAAAATCACATTTATCTTCC 66
consensus_1901#1 TCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAG 240
** * *** * * ** * ** **** * **** *** ** * **** *
consensus_1901#0 TTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGGTCTGGTGTCACACAGTGAC 126
consensus_1901#1 AAAGTTGCTGAAA---AACTAGATGAAATCTACATAGCAGGTCTGGTGTCACACAGTGAC 297
* ** * * * ** * ** ************************
consensus_1901#0 TTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTT 186
consensus_1901#1 TTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTT 357
************************************************************
consensus_1901#0 CTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGT 246
consensus_1901#1 CTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGT 417
************************************************************
consensus_1901#0 GGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGT 306
consensus_1901#1 GGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGT 477
************************************************************
consensus_1901#0 AAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGAT 366
consensus_1901#1 AAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGAT 537
************************************************************
consensus_1901#0 GTGACAACGGGCCAGAGGAAGTATGGCGGTCCCCCACCTGAAGCTGTTCATTCAGGGGCT 426
consensus_1901#1 GTGACA------------------------------------------------------ 543
******
consensus_1901#0 CAGCCAACCATCGGTACAGAGATATTTGTCGGCAAAATACCCAGAGACCTGTTTGAGGAT 486
consensus_1901#1 ------------------------------------------------------------
consensus_1901#0 GAGCTGGTTCCGCTCTTTGAGAAAGCCGGGCCCATCTGGGACCTGCGACTGATGATGGAT 546
consensus_1901#1 ------------------------------------------------------------
consensus_1901#0 CCACTCAGCGGCCTGAACAGAGGCTACGCCTTTGTCACTTTCTGCACTAAAGAAGCTGCA 606
consensus_1901#1 ------------------------------------------------------------
consensus_1901#0 CAGCAGGCGGTGAAATTG 624
consensus_1901#1 ------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |