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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence
[GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAATGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGAGCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGAAAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATTTTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAAGACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGTCACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC]
[+] EMBL BU807882 [GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAATGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGAGCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGAAAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATTTTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAAGACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGTCACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACATGATGTTAAACTGAAAATATTCAATAAAACCA ]
[+] EMBL FR0056264 [ ACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC]
consensusID : consensus_1907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence
[TTCTTTTCTCTGTAATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCTGTCTACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGAGACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAATCACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACC]
[+] EMBL CA845362 [TTCTTTTCTCTGTAATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCTGTCTACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGAGACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAATCACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1907#0 GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAA 60
consensus_1907#1 ------------------------------------------------------------
consensus_1907#0 TGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGA 120
consensus_1907#1 ------------------------------------------------------------
consensus_1907#0 GCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGA 180
consensus_1907#1 --------------------------------------------TTCTTTTCTCTGT--- 13
* *** * * *
consensus_1907#0 AAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATT 240
consensus_1907#1 -AATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCT-----------GTC 61
**** * * * * ** **** * ******* *
consensus_1907#0 TTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAA 300
consensus_1907#1 TACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGA 121
* ****************************************************** *
consensus_1907#0 GACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGT 360
consensus_1907#1 GACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAAT 181
**************** ******* ********************** ********** *
consensus_1907#0 CACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGA 420
consensus_1907#1 CACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGA 241
**************** ******** ****** **** *******************
consensus_1907#0 TTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGC 480
consensus_1907#1 TTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGC 301
************************************************************
consensus_1907#0 AATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGA 540
consensus_1907#1 AATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGA 361
************************************************************
consensus_1907#0 AAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTG 600
consensus_1907#1 AAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTG 421
************************************************************
consensus_1907#0 ATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAAC 660
consensus_1907#1 ATGTTAAACTGAAAATATTCAATAAAACC------------------------------- 450
*****************************
consensus_1907#0 CCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC 695
consensus_1907#1 -----------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |