These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [CCTGTCAGGTGAACATCAACAGGCAGAAGATCGACGCTCCTTCCTTTGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTGGTTCATCTTCCTGCGCAGCATGGTGGGATGTGGAGTGGCAGGTGTGTCACAAGGGTTCGTGTTGAAGACGGAGTTTATTCCTGCACAACATCGAGCTCTCCTGCTTCCTCTAGCTACAATCTTCTGGATGATTGGTTCCATGCTCATCATCATATTGGGGATGTTGCTGGTCCCCACCCTGGGGTGGAGGTGGATGATCCGGGTCTCAATTGCCCCCAGTCTCATCCTCATCTTCCTATTTAAGTTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTG] [+] EMBL CA588442 [CCTGTCAGGTGAACATCAACAGGCAGAAGATCGACGCTCCTTCCTTTGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTGGTTCATCTTCCTGCGCAGCATGGTGGGATGTGGAGTGGCAGGTGTGTCACAAGGGTTCGTGTTGAAGACGGAGTTTATTCCTGCACAACATCGAGCTCTCCTGCTTCCTCTAGCTACAATCTTCTGGATGATTGGTTCCATGCTCATCATCATATTGGGGATGTTGCTGGTCCCCACCCTGGGGTGGAGGTGGATGATCCGGGTCTCAATTGCCCCCAGTCTCATCCTCATCTTCCTATTTAAGTTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTG] consensusID : consensus_1928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CGGTTAGGTGAACATCAACAGGCAGAAGACCGACGCTCCTTCCATTGGGGGATCACATGAAGACCGAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCCGGTGTCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGGTGAGCTCACAGCCGTTTCCAACTGCCTGACATCACCTGGAACACCTGGAACACCTGTCCTGTTACTGCTGAGTGTGTCGGTCCTCAGAGGTCCCGTGTTGTGTTTAGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTCTTTCTTTCCCTTTTCCTCCCGTCTGATTGCTGCTGCTCGTTCTCCAACGTTCTTCTTTTGCTGGTGCAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTG] [+] EMBL CA588454 [CGGTTAGGTGAACATCAACAGGCAGAAGACCGACGCTCCTTCCATTGGGGGATCACATGAAGACCGAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCCGGTGTCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGGTGAGCTCACAGCCGTTTCCAACTGCCTGACATCACCTGGAACACCTGGAACACCTGTCCTGTTACTGCTGAGTGTGTCGGTCCTCAGAGGTCCCGTGTTGTGTTTAGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTCTTTCTTTCCCTTTTCCTCCCGTCTGATTGCTGCTGCTCGTTCTCCAACGTTCTTCTTTTGCTGGTGCAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTG] consensusID : consensus_1928#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [ACCTGGCCAGGTGAACATCAACACGCAGAAGATCGACGCTCCTTCAGGTGTAATGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGATANTTTGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGCCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGCTCTTCTCCCTGGAGCTGACCCGTCCCTGTGTCCCTCCTCCCCAGGTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTGGAAACGCTGCAGAAAATAGCAGCCATGAACCGAT] [+] EMBL BU807793 [ACCTGGCCAGGTGAACATCAACACGCAGAAGATCGACGCTCCTTCAGGTGTAATGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGATANTTTGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGCCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGCTCTTCTCCCTGGAGCTGACCCGTCCCTGTGTCCCTCCTCCCCAGGTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTGGAAACGCTGCAGAAAATAGCAGCCATGAACCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1928#0 --CCTGTCAGGTGAACATCAACAGGCAGAAGATCGACGCTCCTTC-----CTTTGGGGGA 53 consensus_1928#1 ---CGGTTAGGTGAACATCAACAGGCAGAAGACCGACGCTCCTTC-----CATTGGGGGA 52 consensus_1928#2 ACCTGGCCAGGTGAACATCAACACGCAGAAGATCGACGCTCCTTCAGGTGTAATGGGGGA 60 * *************** ******** ************ ******* consensus_1928#0 TCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAA 113 consensus_1928#1 TCACATGAAGACCGAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAA 112 consensus_1928#2 TCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAA 120 ************* ********************************************** consensus_1928#0 ACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGG 173 consensus_1928#1 ACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGG 172 consensus_1928#2 ACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGG 180 ************************************************************ consensus_1928#0 CTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGC 233 consensus_1928#1 CTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCCGGTGTCGTGGAGGC 232 consensus_1928#2 CTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGC 240 ********************************************* *** ********** consensus_1928#0 CATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGA 293 consensus_1928#1 CATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGA 292 consensus_1928#2 CATGGATANTTTGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGCCGCCTAGA 300 ****** * **************************************** ******** consensus_1928#0 GGACTGGCAGGTGGCGCTGGTCTCCACGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGT 353 consensus_1928#1 GGACTGGCAGGTGGCGCTGGTCTCCACGGTGA-GCTCACAGCCGTTTCCAACTGC----- 346 consensus_1928#2 GGACTGGCAGGTGGCGCTGGTCTCCACGCTCTTCTCCCTGGAGCTGACCCGTCCCTGTGT 360 **************************** * * * * * consensus_1928#0 TCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTGGTGTTTGGAGGGTTTGT 413 consensus_1928#1 -CTG-------ACATCAC---------------CTGGAA-----CACCTGGAACACCTGT 378 consensus_1928#2 CCCTCCTCCCCAGGTTATC--------------CCAGAATCGGCTCGTTATAACGTATCT 406 * * * * *** * * * * consensus_1928#0 G-TGGAG---CTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTGGTTCA 469 consensus_1928#1 CCTGTTA---CTGCTGAGTGTGTCGGTCCTCAG---AGGTCCCGTGTTGTGTTTAGATGG 432 consensus_1928#2 GCAGGAAACCTTCCAGCTGCTGTGGAAACGCTGCAGAAAATAGCAGCCATGAACCGAT-- 464 * * * * * * * ** * * consensus_1928#0 TCTTCCTGCGCAGCATGGTGGGATGTGGAGTGGCAGGTGTGTCACAAGGGTTCGTGTTGA 529 consensus_1928#1 TGTTCCTGGGCTTCATGGTC---TGCGGAGTTCTGGGGGGAT-----------ACGTTGC 478 consensus_1928#2 ------------------------------------------------------------ consensus_1928#0 AGACGGAGTTTATTCCTGCACAACATCGAGCTCTCCTGCTTCCTCTAGCTACAATCTTCT 589 consensus_1928#1 TGACAGATACGGACGCTGG--AAGGTCTTTCTTTCCCTTTTCCTCCCGTCTGATTGCTGC 536 consensus_1928#2 ------------------------------------------------------------ consensus_1928#0 GGATGATTGGTTCCATGCTCATCATCATATTGGGGATGTTGCTGGTCCCCACCCTGGGGT 649 consensus_1928#1 TGCTCGTTC-TCCAACGTTCTTCTT----TTGCTGGTGCAGGTGGTGTTTGG---AGGGT 588 consensus_1928#2 ------------------------------------------------------------ consensus_1928#0 GGAGGTGGATGATCCGGGTCTCAATTGCCCCCAGTCTCATCCTCATCTTCCTATTTAAGT 709 consensus_1928#1 TTGTGTGGA-------GCTCCTACTTCTCTCTGCTCACATCCTT-TGCTCCTTCTTATGG 640 consensus_1928#2 ------------------------------------------------------------ consensus_1928#0 TTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTG 765 consensus_1928#1 TTG----------------------------------------------------- 643 consensus_1928#2 -------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |