|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence
[AGCAAGCCCTGAAGCGTTTGAGCCCAAAAAATGGATGAGCTGCAGTTCAAATCACAGGCTAATTTTTAATTTCTTCACATGCCTCACTCTTTGCCTCAAGCACTTTTTTAGATCTTTCTCTCTCTTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCTGTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGCTCTTGCGCGCGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGAAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTGTGTGCCTGGGCTTTTTCCTTTATGAAAACTTCAATTTCTCTTTGCAGACTTAACAGCTCCGCCATGTCGTTTAGCGTCTTCCCGTCGTCTTGGTAACACAACGAAGAAGCGTTCCAGTGCTGCCCACACCTCAACAAGGACAGGGGCATAAATTTGGT]
[+] EMBL CA329428 [AGCAAGCCCTGAAGCGTTTGAGCCCAAAAAATGGATGAGCTGCAGTTCAAATCACAGGCTAATTTTTAATTTCTTCACATGCCTCACTCTTTGCCTCAAGCACTTTTTTAGATCTTTCTCTCTCTTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCTGTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATTTTCACTCCATTCAGGTAGCTCTTGCGCGCGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGAAGAAATTCATCTTCGTAATAAAATATGC ]
[-] EMBL CA590464 [ TTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCTGTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTGTGTGCCTGGGCTTTTTCCTTTATGAAAACTTCAATTTCTCTTTGCAGACTTAACAGCTCCGCCATGTCGTTTAGCGTCTTCCCGTCGTCTTGGTAACACAACGAAGAAGCGTTCCAGTGCTGCCCACACCTCAACAAGGACAGGGGCATAAATTTGGT]
consensusID : consensus_1932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[CTCATCAGGGGCTGGTCTGAATGGAGAGTTGAAAATCCCCGGTCGCTGTTTTGTGCTCAGAAGATGGTGAGACCTGTGGGCTTGGTTGGCTCTCTCTCTCTCCTTTTCCATCATCTGAAAATTCTCTCTTTCTCTCCTGTGGACTTCCTCAAGTTTATCCATCTCCCTCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTTGTTTTTGGTATCTCTTTCTATAGTTACTATAGAAAGAAATCT]
[-] EMBL BU807750 [CTCATCAGGGGCTGGTCTGAATGGAGAGTTGAAAATCCCCGGTCGCTGTTTTGTGCTCAGAAGATGGTGAGACCTGTGGGCTTGGTTGGCTCTCTCTCTCTCCTTTTCCATCATCTGAAAATTCTCTCTTTCTCTCCTGTGGACTTCCTCAAGTTTATCCATCTCCCTCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTTGTTTTTGGTATCTCTTTCTATAGTTACTATAGAAAGAAATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1932#0 AGCAAGCCCTGAAGCGTTTGAGCCCAAAAAATGGATGAGCTGCAGTTCAAATCACAGGCT 60
consensus_1932#1 ------CTCATCAGGGGCTGGTCT----GAATGGA-GAGTTGA-----AAATCCCCGGTC 44
* * ** * ** * ****** *** ** ***** * **
consensus_1932#0 AATTTTTAATTTCTTCACATGCCTCACTCTTTGCCTCAAGCACTTTTTTAGATCTTTCTC 120
consensus_1932#1 GCTGTTT--TGTGCTCAGAAG----ATGGTGAGACCTGTGGGCTTGGTTGGCTCTCTCTC 98
* *** * * *** * * * * * * * *** ** * *** ****
consensus_1932#0 TCTCTTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCT 180
consensus_1932#1 TCTCCTTTTCCATCATCTGAAAATTCTCTCTTTCT----------CTCCTGTGG--ACTT 146
**** ** * * * * ** * ** ** * ***** * *
consensus_1932#0 GTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGT 240
consensus_1932#1 CCTCAAGTTTATCCATCTCCCTCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGT 206
**** * ** **************************************
consensus_1932#0 AGCTCTTGCGCGCGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACT 300
consensus_1932#1 AGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACT 266
** ******* * ***********************************************
consensus_1932#0 TTTGGATCTTGACTGCCATCTCCTTGAAGAAATTCATCTTCGTAATAAAATATGCTGCCT 360
consensus_1932#1 TTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCT 326
************************** *********************************
consensus_1932#0 TCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGA 420
consensus_1932#1 TCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGA 386
************************************************************
consensus_1932#0 CTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCT 480
consensus_1932#1 CTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCT 446
************************************************************
consensus_1932#0 GAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTGTGTGCCT 540
consensus_1932#1 GAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACT-TGTTTTT 505
**************************************************** *** *
consensus_1932#0 GGG--CTTTTTCCTTTATGAAAACTTCAATTTCTCTTTGCAGACTTAACAGCTCCGCCAT 598
consensus_1932#1 GGTATCTCTTTCTATAGTTACTATAGAAAGAAATCT------------------------ 541
** ** **** * * * * ** ***
consensus_1932#0 GTCGTTTAGCGTCTTCCCGTCGTCTTGGTAACACAACGAAGAAGCGTTCCAGTGCTGCCC 658
consensus_1932#1 ------------------------------------------------------------
consensus_1932#0 ACACCTCAACAAGGACAGGGGCATAAATTTGGT 691
consensus_1932#1 ---------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |