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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence
[TAACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACAGAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGTGGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAAAGAGTTTGGTGAAATCAGCTATGGGGTGTTGATGCCCAAGAAGCGCCAGGCATTGGTGGAGTATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGCTGACAACCAAGTGTACATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGGAGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCATCTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAGAGAATCGTCATCTTCAGGAAGAACGGTGTCCAAGCTATGGTTGAGTTTGACTCTGTGCAAAGTGCACAGCGTGCGAAGGCTTCTCTTAATGGCGCAGACATCTACTCCGGCTGCTGCACCCTGAAGATCGAGTATGCCAAGCCGACTCGTCTG]
[+] EMBL CA591442 [TAACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACAGAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGTGGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAAAGAGTTTGGTGAAATCA CTATGGGG TGATGCCC AAACGCCAGGCATTGGTGGAGTATGCA ACATGAATGGATCG TCACAGCCGTAACTTTCGCCGCTGACAACCAAGTGTACATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGGAGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCATCTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAG ]
[+] EMBL BU807694 [ ACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACAGAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGTGGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAAAGAGTTTGGTGAAATCAGCTATGTGGTGTTGATGCCCAAGAAGCGCCAGGCATTGGTGGAGTATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGCTGACAACCAAATGTACATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGGAGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCATCTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAGAGAATCGTCATCTTCAGGAAGAACGGTGTCCAAGCTATGGTTGAGTTTGACTCTGTGCAAAGTGCACAGCGTGCGAAGGCTTCTCTTAATGGCGCAGACATCTACTCCGGCTGCTGCACCCTGAAGATCGAGTATGCCAAGCCGACTCGTCTG]
consensusID : consensus_1947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[GAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGAGGTGCGCCATGTTCGGGGTCTGGAGGACGCAGATACCGAGGTCGACCTTTGTGAGGCCCTGAAAGAGTTTCGTGAAATCAGCTATGTGGAGGTGATGCCCAAGAAGCGCCAGACATTGTTGGAGGATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGTGACAACCAAGGGACATTGCTGGCACCCAGCGTTATCGCTACTCACCAGCAGAGATATCAGGCAGAG]
[+] EMBL FR0060092 [GAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGAGGTGCGCCATGTTCGGGGTCTGGAGGACGCAGATACCGAGGTCGACCTTTGTGAGGCCCTGAAAGAGTTTCGTGAAATCAGCTATGTGGAGGTGATGCCCAAGAAGCGCCAGACATTGTTGGAGGATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGTGACAACCAAGGGACATTGCTGGCACCCAGCGTTATCGCTACTCACCAGCAGAGATATCAGGCAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1947#0 TAACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACA 60
consensus_1947#1 ------------------------------------------------------------
consensus_1947#0 GAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGT 120
consensus_1947#1 -----------GAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGAGGT 49
********************************************* ***
consensus_1947#0 GGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAA 180
consensus_1947#1 GCGCCATGTTCGGGGTCTGGAGGACGCAGATACCGAGGTCGACCTTTGTGAGGCCCTGAA 109
* ***************** ***** * ******** *********** ********
consensus_1947#0 AGAGTTTGGTGAAATCAGCTATGGGGTGTTGATGCCCAAGAAGCGCCAGGCATTGGTGGA 240
consensus_1947#1 AGAGTTTCGTGAAATCAGCTATGTGGAGGTGATGCCCAAGAAGCGCCAGACATTGTTGGA 169
******* *************** ** * ******************** ***** ****
consensus_1947#0 GTATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGCTGACAACCAAGTGTA 300
consensus_1947#1 GGATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCG-TGACAACCAAG-GGA 227
* ****************************************** *********** * *
consensus_1947#0 CATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGG 360
consensus_1947#1 CATTGCTGG-CACCCAGCGTT-ATCG-CTACTC-ACCAGC--AGAGATATC-AGGCAGAG 280
********* *********** *** ****** ***** ******* **** *
consensus_1947#0 AGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCAT 420
consensus_1947#1 ------------------------------------------------------------
consensus_1947#0 CTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAGAG 480
consensus_1947#1 ------------------------------------------------------------
consensus_1947#0 AATCGTCATCTTCAGGAAGAACGGTGTCCAAGCTATGGTTGAGTTTGACTCTGTGCAAAG 540
consensus_1947#1 ------------------------------------------------------------
consensus_1947#0 TGCACAGCGTGCGAAGGCTTCTCTTAATGGCGCAGACATCTACTCCGGCTGCTGCACCCT 600
consensus_1947#1 ------------------------------------------------------------
consensus_1947#0 GAAGATCGAGTATGCCAAGCCGACTCGTCTG 631
consensus_1947#1 -------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |