These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence [TAACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACAGAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGTGGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAAAGAGTTTGGTGAAATCAGCTATGGGGTGTTGATGCCCAAGAAGCGCCAGGCATTGGTGGAGTATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGCTGACAACCAAGTGTACATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGGAGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCATCTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAGAGAATCGTCATCTTCAGGAAGAACGGTGTCCAAGCTATGGTTGAGTTTGACTCTGTGCAAAGTGCACAGCGTGCGAAGGCTTCTCTTAATGGCGCAGACATCTACTCCGGCTGCTGCACCCTGAAGATCGAGTATGCCAAGCCGACTCGTCTG] [+] EMBL CA591442 [TAACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACAGAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGTGGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAAAGAGTTTGGTGAAATCA CTATGGGG TGATGCCC AAACGCCAGGCATTGGTGGAGTATGCA ACATGAATGGATCG TCACAGCCGTAACTTTCGCCGCTGACAACCAAGTGTACATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGGAGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCATCTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAG ] [+] EMBL BU807694 [ ACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACAGAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGTGGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAAAGAGTTTGGTGAAATCAGCTATGTGGTGTTGATGCCCAAGAAGCGCCAGGCATTGGTGGAGTATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGCTGACAACCAAATGTACATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGGAGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCATCTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAGAGAATCGTCATCTTCAGGAAGAACGGTGTCCAAGCTATGGTTGAGTTTGACTCTGTGCAAAGTGCACAGCGTGCGAAGGCTTCTCTTAATGGCGCAGACATCTACTCCGGCTGCTGCACCCTGAAGATCGAGTATGCCAAGCCGACTCGTCTG] consensusID : consensus_1947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [GAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGAGGTGCGCCATGTTCGGGGTCTGGAGGACGCAGATACCGAGGTCGACCTTTGTGAGGCCCTGAAAGAGTTTCGTGAAATCAGCTATGTGGAGGTGATGCCCAAGAAGCGCCAGACATTGTTGGAGGATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGTGACAACCAAGGGACATTGCTGGCACCCAGCGTTATCGCTACTCACCAGCAGAGATATCAGGCAGAG] [+] EMBL FR0060092 [GAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGAGGTGCGCCATGTTCGGGGTCTGGAGGACGCAGATACCGAGGTCGACCTTTGTGAGGCCCTGAAAGAGTTTCGTGAAATCAGCTATGTGGAGGTGATGCCCAAGAAGCGCCAGACATTGTTGGAGGATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGTGACAACCAAGGGACATTGCTGGCACCCAGCGTTATCGCTACTCACCAGCAGAGATATCAGGCAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1947#0 TAACATGGCTACTGCTGCAAGCCGTTATTACAGTGAAGACGGTAGGGCATCAAAAAGACA 60 consensus_1947#1 ------------------------------------------------------------ consensus_1947#0 GAAAACCGACGGAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGTGGT 120 consensus_1947#1 -----------GAATGGACACGGGATACGAAGATCCACACAAGACGCTCCCATCGGAGGT 49 ********************************************* *** consensus_1947#0 GGTCCATGTTCGGGGTCTGGTGGACGGTGTTACCGAGGGTGACCTTTGTGATGCCCTGAA 180 consensus_1947#1 GCGCCATGTTCGGGGTCTGGAGGACGCAGATACCGAGGTCGACCTTTGTGAGGCCCTGAA 109 * ***************** ***** * ******** *********** ******** consensus_1947#0 AGAGTTTGGTGAAATCAGCTATGGGGTGTTGATGCCCAAGAAGCGCCAGGCATTGGTGGA 240 consensus_1947#1 AGAGTTTCGTGAAATCAGCTATGTGGAGGTGATGCCCAAGAAGCGCCAGACATTGTTGGA 169 ******* *************** ** * ******************** ***** **** consensus_1947#0 GTATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCGCTGACAACCAAGTGTA 300 consensus_1947#1 GGATGCAGACATGAATGGATCGTTCACAGCCGTAACTTTCGCCG-TGACAACCAAG-GGA 227 * ****************************************** *********** * * consensus_1947#0 CATTGCTGGTCACCCAGCGTTTATCAACTACTCCACCAGTCAGAAGATATCCAGGCCAGG 360 consensus_1947#1 CATTGCTGG-CACCCAGCGTT-ATCG-CTACTC-ACCAGC--AGAGATATC-AGGCAGAG 280 ********* *********** *** ****** ***** ******* **** * consensus_1947#0 AGACTCTGACGACTCCAGAAGTGTTAATAATGTCCTTTTGTTCACCATCATGAACCCCAT 420 consensus_1947#1 ------------------------------------------------------------ consensus_1947#0 CTACCCCATCACCACGGATGTCCTTTACACTATCTGCAACAACTGTGGGCCAGTCCAGAG 480 consensus_1947#1 ------------------------------------------------------------ consensus_1947#0 AATCGTCATCTTCAGGAAGAACGGTGTCCAAGCTATGGTTGAGTTTGACTCTGTGCAAAG 540 consensus_1947#1 ------------------------------------------------------------ consensus_1947#0 TGCACAGCGTGCGAAGGCTTCTCTTAATGGCGCAGACATCTACTCCGGCTGCTGCACCCT 600 consensus_1947#1 ------------------------------------------------------------ consensus_1947#0 GAAGATCGAGTATGCCAAGCCGACTCGTCTG 631 consensus_1947#1 ------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |