These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 777 fasta sequence [AGCCTCCGTTTTGGAACTTTATGGCTGCGCGACCAGTAAAATCAAACCAATTAAACCACCCGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGCTCCAGCTCTTTTGATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGAGACACAGTGACATTCTCTTCTGACAATGGGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAGAGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGGGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCGGCAGCGCAGGAACCAGGGCCGGCCCAGCAAGCTCAAGAAGTTTCAGGAAGCAAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCGCCGGTCTGGCAGCTCT] [+] EMBL CA589365 [AGCCTCCGTTTTGGAACTTTATGGCTGCGCGACCAGTAAAATCAAACCAATTAAACCACCCGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGTTCCAGCTCTTTTGATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGTGATACAGTTTCATTCTCTTCTGACAATGTGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAGAGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGGGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTA ] [+] EMBL FR0058876 [ AGTAAAATCAAACTTATTAAACCACCCGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGCTCCAGCTCTTTTGATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGAGACACAGTGACATTCTCTTCTGACAATGGGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGGGACAATAAAGAG ] [+] EMBL BU805226 [ GAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAGAGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGGGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCGGCAGCGCAGGAACCAGGGCCGGCCCAGCAAGCTCAAGAAGTTTCAGGAAGCAAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCGCCGGTCTGGCAGCTCT] consensusID : consensus_1954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [ATCCAGGCCCTATGCAACTCGAAGACGAAACAGTTGAGGACATCAGTTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGAGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCCGGAGCGCAGGAACCCAGGCCGGCCCAGCAAGCTCAAGAAGTTTCAAGGAACCAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCCCCGGGCTGGCA] [+] EMBL CA332975 [ATCCAGGCCCTATGCAACTCGAAGACGAAACAGTTGAGGACATCAGTTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGAGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCCGGAGCGCAGGAACCCAGGCCGGCCCAGCAAGCTCAAGAAGTTTCAAGGAACCAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCCCCGGGCTGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1954#0 AGCCTCCGTTTTGGAACTTTATGGCTGCGCGACCAGTAAAATCAAACCAATTAAACCACC 60 consensus_1954#1 ------------------------------------------------------------ consensus_1954#0 CGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGCTCCAGCTCTTTT 120 consensus_1954#1 ------------------------------------------------------------ consensus_1954#0 GATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGAGACACAGTGACATTCTC 180 consensus_1954#1 ------------------------------------------------------------ consensus_1954#0 TTCTGACAATGGGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGA 240 consensus_1954#1 ------------------------------------------------------------ consensus_1954#0 ACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAG 300 consensus_1954#1 -------------ATCCAGGCCCTATGCAACTCGAAGACGAA--ACAGTTGAGGACATCA 45 ** * ** * * ** * *** *** * * consensus_1954#0 AGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTG 360 consensus_1954#1 GTTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTG 105 ********************************************************** consensus_1954#0 GTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAA 420 consensus_1954#1 GTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAA 165 ************************************************************ consensus_1954#0 ACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGAT 480 consensus_1954#1 ACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGAT 225 ************************************************************ consensus_1954#0 ATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACG 540 consensus_1954#1 ATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACG 285 ************************************************************ consensus_1954#0 GGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCC 600 consensus_1954#1 AGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCC 345 *********************************************************** consensus_1954#0 CACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCA 660 consensus_1954#1 CACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCA 405 ************************************************************ consensus_1954#0 GAGGTGGTTCCGGCAGCGCAGGAACCAGGGCCGGCCCAGCAAGCTCAAGAAGTTTCAGGA 720 consensus_1954#1 GAGGTGGTTCCCGGAGCGCAGGAACCCAGGCCGGCCCAGCAAGCTCAAGAAGTTTCAAGG 465 *********** * ************ ***************************** * consensus_1954#0 AGCAAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCGCCGGTCTGGCAGCTCT 777 consensus_1954#1 AACCAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCCCCGGGCTGGCA----- 517 * * ************************************ **** ****** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |