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Takifugu rubripes
cluster # 1954 cluster # 1954       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1954#0 length = 777 sequences # 3  
 consensus_1954#1 length = 517 sequences # 1  
consensusID : consensus_1954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 777
fasta sequence 
                              [AGCCTCCGTTTTGGAACTTTATGGCTGCGCGACCAGTAAAATCAAACCAATTAAACCACCCGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGCTCCAGCTCTTTTGATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGAGACACAGTGACATTCTCTTCTGACAATGGGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAGAGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGGGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCGGCAGCGCAGGAACCAGGGCCGGCCCAGCAAGCTCAAGAAGTTTCAGGAAGCAAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCGCCGGTCTGGCAGCTCT]

[+] EMBL CA589365             [AGCCTCCGTTTTGGAACTTTATGGCTGCGCGACCAGTAAAATCAAACCAATTAAACCACCCGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGTTCCAGCTCTTTTGATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGTGATACAGTTTCATTCTCTTCTGACAATGTGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAGAGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGGGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTA                                                                                                                                                        ]
[+] EMBL FR0058876            [                                  AGTAAAATCAAACTTATTAAACCACCCGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGCTCCAGCTCTTTTGATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGAGACACAGTGACATTCTCTTCTGACAATGGGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGGGACAATAAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BU805226             [                                                                                                                                                                                                                           GAGAAATTTGATTTTCTAAGAACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAGAGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGGGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCGGCAGCGCAGGAACCAGGGCCGGCCCAGCAAGCTCAAGAAGTTTCAGGAAGCAAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCGCCGGTCTGGCAGCTCT]




>consensus_1954#0
AGCCTCCGTTTTGGAACTTTATGGCTGCGCGACCAGTAAAATCAAACCAATTAAACCACC
CGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGCTCCAGCTCTTTT
GATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGAGACACAGTGACATTCTC
TTCTGACAATGGGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGA
ACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAG
AGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTG
GTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAA
ACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGAT
ATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACG
GGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCC
CACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCA
GAGGTGGTTCCGGCAGCGCAGGAACCAGGGCCGGCCCAGCAAGCTCAAGAAGTTTCAGGA
AGCAAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCGCCGGTCTGGCAGCTCT

consensusID : consensus_1954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence 
                              [ATCCAGGCCCTATGCAACTCGAAGACGAAACAGTTGAGGACATCAGTTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGAGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCCGGAGCGCAGGAACCCAGGCCGGCCCAGCAAGCTCAAGAAGTTTCAAGGAACCAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCCCCGGGCTGGCA]

[+] EMBL CA332975             [ATCCAGGCCCTATGCAACTCGAAGACGAAACAGTTGAGGACATCAGTTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGAGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCCGGAGCGCAGGAACCCAGGCCGGCCCAGCAAGCTCAAGAAGTTTCAAGGAACCAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCCCCGGGCTGGCA]




>consensus_1954#1
ATCCAGGCCCTATGCAACTCGAAGACGAAACAGTTGAGGACATCAGTTTTTCTGTTTTAG
AATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTGGTTCCCTGAAGGCCA
CGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAAACTGCCGGACCTGTG
GGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGATATTTGAGAGGACAGT
AGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACGAGTTTGCGCCCCCCC
GAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCCCACACAGACCTCCAT
AGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCAGAGGTGGTTCCCGGA
GCGCAGGAACCCAGGCCGGCCCAGCAAGCTCAAGAAGTTTCAAGGAACCAGTTGGAGATT
CACCTTTTATCTTTTGGCTTTCTTCCCCGGGCTGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1954#0      AGCCTCCGTTTTGGAACTTTATGGCTGCGCGACCAGTAAAATCAAACCAATTAAACCACC 60
consensus_1954#1      ------------------------------------------------------------
                                                                                  

consensus_1954#0      CGTTCAAACCAAGCTCAGGCAGCTAAAACAGACGGACCACGAAAAGGCTCCAGCTCTTTT 120
consensus_1954#1      ------------------------------------------------------------
                                                                                  

consensus_1954#0      GATTTTGTGCCGCTTTGAGTTACGAGACTTTCCGAGGTGCCGAGACACAGTGACATTCTC 180
consensus_1954#1      ------------------------------------------------------------
                                                                                  

consensus_1954#0      TTCTGACAATGGGGCGAGCAACAGGTCACCACTGATGGCGAGAAATTTGATTTTCTAAGA 240
consensus_1954#1      ------------------------------------------------------------
                                                                                  

consensus_1954#0      ACAGAAGAGCTGCATTAGAGAAACATTAGAGAAGGAGCTCAGTTACAAGTGACAATAAAG 300
consensus_1954#1      -------------ATCCAGGCCCTATGCAACTCGAAGACGAA--ACAGTTGAGGACATCA 45
                                   **    *    **   *   * **   *   ***  ***  * *   

consensus_1954#0      AGTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTG 360
consensus_1954#1      GTTTTTCTGTTTTAGAATGTTGTCGCACCTCAGCCAGGCTGTGTGGGCAGACTGGATCTG 105
                        **********************************************************

consensus_1954#0      GTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAA 420
consensus_1954#1      GTTCCCTGAAGGCCACGGCTGGGCCGACCTGACCAACCGCGATGGCAAAGTTTACCCCAA 165
                      ************************************************************

consensus_1954#0      ACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGAT 480
consensus_1954#1      ACTGCCGGACCTGTGGGTTTCCATACCCATCACCATCTGCTTCCTGTTTGTCAGGCAGAT 225
                      ************************************************************

consensus_1954#0      ATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACG 540
consensus_1954#1      ATTTGAGAGGACAGTAGCGTCTCCTCTTGCCTCCCTGCTGGGCGTGCATGACAAGAAACG 285
                      ************************************************************

consensus_1954#0      GGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCC 600
consensus_1954#1      AGTTTGCGCCCCCCCGAATCCTGTCCTGGAGGCCTTTTTCTGCCGCACATCGAAGCATCC 345
                       ***********************************************************

consensus_1954#0      CACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCA 660
consensus_1954#1      CACACAGACCTCCATAGAGAGTTTAAGTAAAAAGACGGGCTGCTCCGTCAGACAGGTCCA 405
                      ************************************************************

consensus_1954#0      GAGGTGGTTCCGGCAGCGCAGGAACCAGGGCCGGCCCAGCAAGCTCAAGAAGTTTCAGGA 720
consensus_1954#1      GAGGTGGTTCCCGGAGCGCAGGAACCCAGGCCGGCCCAGCAAGCTCAAGAAGTTTCAAGG 465
                      *********** * ************  ***************************** * 

consensus_1954#0      AGCAAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCGCCGGTCTGGCAGCTCT 777
consensus_1954#1      AACCAGTTGGAGATTCACCTTTTATCTTTTGGCTTTCTTCCCCGGGCTGGCA----- 517
                      * * ************************************ **** ******


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)