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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence
[AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTAGCGCATCCCCTGGCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTAGACCAGGGCGGCAAACTGGTCCTCCCTGGCGGAGCGCACAAGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCACAGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCCCCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT]
[+] EMBL CA589555 [AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTAGCGCATCCCCTGTCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCAGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTAGACCAGGGCGGCAAACTGGTCCTCCCTGGCGGAGCGCACAAGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCACAGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCCCCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT]
[+] EMBL FR0059487 [ GCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTA ]
consensusID : consensus_1956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence
[GCCTCTTAAAAGCGCCCGATGGGAGTATGGCAGGGGCGTGGCTGGATGCGGTTTGTTGCACACGGAGACGACAGAATCCATTTTTTATTTTTGTTGAGAGTTAAATCAGGTTACTAGATTGGGGGAAGCCTTGCGCGATGGGTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGTAAAATCCCATTTTCTCCCTCCTGTTTTTCTTCGAGACAGGGGAGCGCATTCCCTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAAGGGTCCAGCAGCCCCAGGGGCGCCGGGCAGA]
[+] EMBL FR0059933 [GCCTCTTAAAAGCGCCCGATGGGAGTATGGCAGGGGCGTGGCTGGATGCGGTTTGTTGCACACGGAGACGACAGAATCCATTTTTTATTTTTGTTGAGAGTTAAATCAGGTTACTAGATTTTGGGAAGCCTTGCGCGATGGGTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGCCGGGTTTACATTCCTAACTTGGCATCACA ]
[+] EMBL FR0062158 [ TAGATTGGGGGAAGCCTTGCGCGATGGTTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGTAAAATCCCATTTTCTCCCTCCTGTTTTTCTTCGAGACAGGGGAGCGCATTCCCTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAAGGGTCCAGCAGCCCCAGGGGCGCCGGGCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1956#0 AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTA 60
consensus_1956#1 -------------------GCCTCTTAAAAGCGCCCGATGG----GAGTATGGCAGGG-- 35
* * ** ** **** * ******
consensus_1956#0 GCGCATCCCCTGGCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGA 120
consensus_1956#1 --GCGTGGCTGGATGCGGTTTGTTGCACACGGAGACG-ACAGAATCCATTTTTTATTTTT 92
** * * * * *** ** * * * * * *** * * *
consensus_1956#0 CCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCC 180
consensus_1956#1 GTTGAGAGTTAA-ATCAGGTTACTAGATTGG-GGGAAGCCTTGCGCGAT---GGGTGTTA 147
** * * ** * * *** * * * * **** * ** ****
consensus_1956#0 GGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCT 240
consensus_1956#1 AGATGAATACGCGTCTCGGC--------------AGAGGTGGATTT---CCAGAAAGTCA 190
* ** *** ** ** ** * *** * ** **
consensus_1956#0 TAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACT 300
consensus_1956#1 GCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGT 250
* *** * * * *** ** * * * ** ** *
consensus_1956#0 ACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCC 360
consensus_1956#1 AAAATCCCATTTTCTCCCT------CCTGTT--TTTCTTCGAGACAGGGGAGCGCATTCC 302
* * *** ** *** * * * * * * ** * *** *** **
consensus_1956#0 GCTGTTTACGGATTTAGACCAGGGCGGCAAACTG---GTCCTCCCTGGCGGAGC-GCACA 416
consensus_1956#1 -CTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCG 361
**** ** * * *** ** ** * ** **** * *** * * *
consensus_1956#0 AGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCAC 476
consensus_1956#1 AAAACAGCTGGTCCAT-GGTCAAGCGAGAAAGGGTCCAGCAGCC-CCAGGGGCGCCGGGC 419
* * * ** * * * ** * * * * * ** *** * ***** *
consensus_1956#0 AGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCC 536
consensus_1956#1 AGA--------------------------------------------------------- 422
***
consensus_1956#0 CCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT 580
consensus_1956#1 --------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |