These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence [GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTC-CAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAGCCTCTGTACATGCAG] [+] EMBL CA590234 [GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTC CAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAG ] [+] EMBL CA589446 [ TGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTCTCTTCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAGCCTCTGTACATGCAG] [+] EMBL FR0060633 [ TCCCAGGCGCAAACGTGGACGGAGCACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGAGGCCGATGCCTGTCTCCCCAACCACCGACCTGCTCAGCCGAGGAGCTCCTGAGGACACGTCCCTGTTCTC CAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGGGGACATGAGCTCGCCTCTCATGGACGGGACCCCGAGCTGGAGGG GGAGGGGACCCCTCGCAGCGGCGGGCGCGG ACCCCGGCCAGGCA ] consensusID : consensus_1977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [GACAGGGGTGTACTCAACACAAATCCCTCCCCCCCAACAGTGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGGCCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGACACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACATGAGGCTCCC] [+] EMBL FR0061021 [GACAGGGGTGTACTCAACACAAATCCCTCCCCCCCAACAGTGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGGCCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGACACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACATGAGGCTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1977#0 GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTC 60 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 CCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAG 120 consensus_1977#1 -------------------GACAGGGGTGTACTCAACACAAATCCCTCC-CCCCCAACAG 40 ** *** ** ************ * ********** consensus_1977#0 TGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGA 180 consensus_1977#1 TGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGG- 99 **** * ************************** ******** *************** consensus_1977#0 CCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGA 240 consensus_1977#1 CCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGA 159 ********************** ****************************** * **** consensus_1977#0 CACGTCCCTGTTCTCCAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACAT 300 consensus_1977#1 CACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACAT 219 **** *********************** ************************ ****** consensus_1977#0 GAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGG 360 consensus_1977#1 GAGGCTCCC--------------------------------------------------- 228 *** ** consensus_1977#0 CGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCA 420 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 AGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGC 480 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 AGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTT 540 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 TCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCT 600 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 GGACCTGAACGAGCCTCTGTACATGCAG 628 consensus_1977#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |