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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence
[GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTC-CAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAGCCTCTGTACATGCAG]
[+] EMBL CA590234 [GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTC CAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAG ]
[+] EMBL CA589446 [ TGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTCTCTTCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAGCCTCTGTACATGCAG]
[+] EMBL FR0060633 [ TCCCAGGCGCAAACGTGGACGGAGCACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGAGGCCGATGCCTGTCTCCCCAACCACCGACCTGCTCAGCCGAGGAGCTCCTGAGGACACGTCCCTGTTCTC CAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGGGGACATGAGCTCGCCTCTCATGGACGGGACCCCGAGCTGGAGGG GGAGGGGACCCCTCGCAGCGGCGGGCGCGG ACCCCGGCCAGGCA ]
consensusID : consensus_1977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[GACAGGGGTGTACTCAACACAAATCCCTCCCCCCCAACAGTGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGGCCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGACACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACATGAGGCTCCC]
[+] EMBL FR0061021 [GACAGGGGTGTACTCAACACAAATCCCTCCCCCCCAACAGTGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGGCCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGACACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACATGAGGCTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1977#0 GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTC 60
consensus_1977#1 ------------------------------------------------------------
consensus_1977#0 CCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAG 120
consensus_1977#1 -------------------GACAGGGGTGTACTCAACACAAATCCCTCC-CCCCCAACAG 40
** *** ** ************ * **********
consensus_1977#0 TGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGA 180
consensus_1977#1 TGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGG- 99
**** * ************************** ******** ***************
consensus_1977#0 CCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGA 240
consensus_1977#1 CCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGA 159
********************** ****************************** * ****
consensus_1977#0 CACGTCCCTGTTCTCCAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACAT 300
consensus_1977#1 CACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACAT 219
**** *********************** ************************ ******
consensus_1977#0 GAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGG 360
consensus_1977#1 GAGGCTCCC--------------------------------------------------- 228
*** **
consensus_1977#0 CGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCA 420
consensus_1977#1 ------------------------------------------------------------
consensus_1977#0 AGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGC 480
consensus_1977#1 ------------------------------------------------------------
consensus_1977#0 AGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTT 540
consensus_1977#1 ------------------------------------------------------------
consensus_1977#0 TCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCT 600
consensus_1977#1 ------------------------------------------------------------
consensus_1977#0 GGACCTGAACGAGCCTCTGTACATGCAG 628
consensus_1977#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |