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Takifugu rubripes
cluster # 1992 cluster # 1992       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1992#0 length = 620 sequences # 2  
 consensus_1992#1 length = 617 sequences # 2  
consensusID : consensus_1992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 620
fasta sequence 
                              [TTGGGGTCATTTCACAACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAGAAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAGTATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCCTGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCTGGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGGTCAGCTCCAC]

[+] EMBL CA588975             [TTGGGGTCATTTCACAACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAGAAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAGTATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCCTGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCTGGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGG                                                                                                                                                              ]
[+] EMBL CA333313             [               AACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAGAAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCCTGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCTGGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGGTCAGCTCCAC]




>consensus_1992#0
TTGGGGTCATTTCACAACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAG
AAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAGTATTCTGGACGGGAGCACAG
AAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGG
AGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCG
CTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACT
ATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCC
TGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCT
GGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGGGTCACGGCACTCACCTCC
GAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTC
CCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCA
TCGTCCTGGGTCAGCTCCAC

consensusID : consensus_1992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 617
fasta sequence 
                              [GAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGNGGCTGCACTTTGTCATGTTCCTCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCCAGAAAATGGATCCCTCTGGCTCAGTCCTTCCAGGTGCTCGGTACCTATGCCCAAACTGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGCTCAGCTCCACACCCAGGGAAACTGCCACGGCCTGCATGCTTTTATTGTGCCGATCCGTGACATGGACACGCACG]

[+] EMBL FR0059675            [GAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGNGGCTGCACTTTGTCATGTTCCTCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCC                                                                                                                                                                                                                                                                                              ]
[+] EMBL BU805260             [    GCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGGGGCTGCACTTTATCATGTTCCTCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCCAGAAAATGGATCCCTCTGGCTCAGTCCTTCCAGGTGCTCGGTACCTATGCCCAAACTGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGCTCAGCTCCACACCCAGGGAAACTGCCACGGCCTGCATGCTTTTATTGTGCCGATCCGTGACATGGACACGCACG]




>consensus_1992#1
GAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGAC
CCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGA
CCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGAT
GATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAA
TCTTGCTATGGCTAACCAACATGAGGCCCTGNGGCTGCACTTTGTCATGTTCCTCCCAAC
CCTGTACAGCCAGTGTGACCCTCAGCAGTCCAGAAAATGGATCCCTCTGGCTCAGTCCTT
CCAGGTGCTCGGTACCTATGCCCAAACTGAGATGGGTCACGGCACTCACCTCCGAGGACT
GGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCAT
CAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCT
GGCTCAGCTCCACACCCAGGGAAACTGCCACGGCCTGCATGCTTTTATTGTGCCGATCCG
TGACATGGACACGCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1992#0      TTGGGGTCATTTCACAACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAG 60
consensus_1992#1      ------------------------------------------------------------
                                                                                  

consensus_1992#0      AAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAGTATTCTGGACGGGAGCACAG 120
consensus_1992#1      -------GAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAG 53
                             ******************************** ********************

consensus_1992#0      AAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGG 180
consensus_1992#1      AAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGG 113
                      ************************************************************

consensus_1992#0      AGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCG 240
consensus_1992#1      AGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCG 173
                      ************************************************************

consensus_1992#0      CTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACT 300
consensus_1992#1      CTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACT 233
                      ************************************************************

consensus_1992#0      ATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCC 360
consensus_1992#1      ATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGNGGCTGCACTTTGTCATGTTCC 293
                      *******   **      *  **   *  *** ** **   ** **  * *  *******

consensus_1992#0      TGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCT 420
consensus_1992#1      TCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCCAGAAAATGGATCCCTCTGGCTC 353
                      * ** **  **   * ****     ***  ****          *   ** * *  **  

consensus_1992#0      GGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGGGTCACGGCACTCACCTCC 480
consensus_1992#1      AGTCCTTCCAGGTGCTCGGTACCTATGCCCAAACTGAGATGGGTCACGGCACTCACCTCC 413
                       *  * ***** *  * ** ***** ** ** ** *************************

consensus_1992#0      GAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTC 540
consensus_1992#1      GAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTC 473
                      ************************************************************

consensus_1992#0      CCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCA 600
consensus_1992#1      CCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCA 533
                      ************************************************************

consensus_1992#0      TCGTCCTGGGTCAGCTCCAC---------------------------------------- 620
consensus_1992#1      TCGTCCTGGCTCAGCTCCACACCCAGGGAAACTGCCACGGCCTGCATGCTTTTATTGTGC 593
                      ********* **********                                        

consensus_1992#0      ------------------------
consensus_1992#1      CGATCCGTGACATGGACACGCACG 617


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)