These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 659 fasta sequence [AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAGCTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACATCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG] [+] EMBL CA331806 [AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTCCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGC ] [+] EMBL CA331010 [ GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGTTGGAGCGAAGCTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACATCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG] [-] EMBL FR0056750 [ ATCATGATATGACATTTACTTCCTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTATAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAGCTGGCTTCCAGCAGGCCGGG ] consensusID : consensus_1996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TTTTTTTTTTTTAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT] [-] EMBL CA333628 [TTTTTTTTTTTTAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1996#0 AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTT 60 consensus_1996#1 -------------------------------------------TTTTTTTTTTTTAATTT 17 ****** consensus_1996#0 GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTT 120 consensus_1996#1 GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTT 77 ************************************************************ consensus_1996#0 TTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGG 180 consensus_1996#1 TTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGG 137 ********************************************************* ** consensus_1996#0 TCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGT 240 consensus_1996#1 TCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGT 197 ************************************************************ consensus_1996#0 GAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCT 300 consensus_1996#1 GAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCT 257 ************************************************************ consensus_1996#0 CATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAA 360 consensus_1996#1 CATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAA 317 ************************************************************ consensus_1996#0 AATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAA 420 consensus_1996#1 AATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT-------------- 363 ********************* *********************** consensus_1996#0 GTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCC 480 consensus_1996#1 ------------------------------------------------------------ consensus_1996#0 GGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAG 540 consensus_1996#1 ------------------------------------------------------------ consensus_1996#0 CTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACA 600 consensus_1996#1 ------------------------------------------------------------ consensus_1996#0 TCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG 659 consensus_1996#1 ----------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |