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Takifugu rubripes
cluster # 1996 cluster # 1996       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1996#0 length = 659 sequences # 3  
consensus_1996#1 length = 363 sequences # 1  

consensusID : consensus_1996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 659
fasta sequence
                              [AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAGCTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACATCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG]

[+] EMBL CA331806             [AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTCCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGC                                                                                                                                                                                                      ]
[+] EMBL CA331010             [                                                            GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGTTGGAGCGAAGCTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACATCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG]
[-] EMBL FR0056750            [                                                                                                                                                  ATCATGATATGACATTTACTTCCTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTATAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAGCTGGCTTCCAGCAGGCCGGG                                                                                                   ]


>consensus_1996#0 AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTT GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTT TTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGG TCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGT GAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCT CATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAA AATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAA GTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCC GGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAG CTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACA TCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG



consensusID : consensus_1996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence
                              [TTTTTTTTTTTTAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT]

[-] EMBL CA333628             [TTTTTTTTTTTTAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT]


>consensus_1996#1 TTTTTTTTTTTTAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTT AGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTT ACTTCTTAGATCAGAGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAAC ATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTG CACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCC GCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATG CAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1996#0      AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTT 60
consensus_1996#1      -------------------------------------------TTTTTTTTTTTTAATTT 17
                                                                            ******

consensus_1996#0      GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTT 120
consensus_1996#1      GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTT 77
                      ************************************************************

consensus_1996#0      TTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGG 180
consensus_1996#1      TTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGG 137
                      ********************************************************* **

consensus_1996#0      TCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGT 240
consensus_1996#1      TCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGT 197
                      ************************************************************

consensus_1996#0      GAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCT 300
consensus_1996#1      GAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCT 257
                      ************************************************************

consensus_1996#0      CATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAA 360
consensus_1996#1      CATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAA 317
                      ************************************************************

consensus_1996#0      AATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAA 420
consensus_1996#1      AATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT-------------- 363
                      *********************  ***********************              

consensus_1996#0      GTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCC 480
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      GGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAG 540
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      CTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACA 600
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      TCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG 659
consensus_1996#1      -----------------------------------------------------------
                                                                                 




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)