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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence
[CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGCATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCCCAAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACC]
[+] EMBL CA332795 [CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGCATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGC AAAAACAGTTGATTCCAAA CCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACC]
[+] EMBL FR0060577 [ ATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCCCAAGGTTGGCca ]
consensusID : consensus_1997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[TTACAGCTTTACAAATATTACCAACGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGATGACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC]
[+] EMBL BU807602 [TTACAGCTTTACAAATATTACCAACGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGATGACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC]
consensusID : consensus_1997#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[TTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAA]
[+] EMBL CA332727 [TTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1997#0 CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGC 60
consensus_1997#2 ------------------------------------------------------------
consensus_1997#1 ------------------------------------------------------------
consensus_1997#0 ATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTT 120
consensus_1997#2 ----------------------------------------------------------TT 2
consensus_1997#1 ------------------------------------------------------------
consensus_1997#0 GAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGG 180
consensus_1997#2 GAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGG 62
consensus_1997#1 ---------------------TTAC-AGCTTTACAAATATTACCAACGTGGTGACATCGG 38
* * * ** * *** **** ********
consensus_1997#0 GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCC 240
consensus_1997#2 GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAA-CAGTTGATTCCAAA--CC 119
consensus_1997#1 GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAA-CAGTTGATTCCAAA--CC 95
***************************************** ************** **
consensus_1997#0 CAAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACC 300
consensus_1997#2 CCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACC 179
consensus_1997#1 CCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACC 155
* ********************************************** ***********
consensus_1997#0 AGG------------------GTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 342
consensus_1997#2 AGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 239
consensus_1997#1 AGG------------------GTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 197
*** ***************************************
consensus_1997#0 AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAAT 402
consensus_1997#2 AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAAT 299
consensus_1997#1 AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAAT 257
************************************************** *********
consensus_1997#0 CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 462
consensus_1997#2 CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 359
consensus_1997#1 CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 317
************************************************************
consensus_1997#0 CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 522
consensus_1997#2 CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 419
consensus_1997#1 CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 377
************************************************************
consensus_1997#0 ATCCAACTCAAAAAA-GATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 581
consensus_1997#2 ATCCAACTCAAAAAA-GATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 478
consensus_1997#1 ATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 437
*************** ********************************************
consensus_1997#0 CCCTCAACATCTCCGCATCACACCCCCTCGAACC-------------------------- 615
consensus_1997#2 CCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGC 538
consensus_1997#1 CCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGC 497
**********************************
consensus_1997#0 ------------------------------------------------------------
consensus_1997#2 AA---------------------------------------------------------- 540
consensus_1997#1 AAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGAT 557
consensus_1997#0 -----------------------------------------------------
consensus_1997#2 -----------------------------------------------------
consensus_1997#1 GACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC 610
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |