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Takifugu rubripes
cluster # 1997 cluster # 1997       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1997#0 length = 615 sequences # 2  
consensus_1997#1 length = 610 sequences # 1  
consensus_1997#2 length = 540 sequences # 1  

consensusID : consensus_1997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 615
fasta sequence
                              [CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGCATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCCCAAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACC]

[+] EMBL CA332795             [CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGCATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGC AAAAACAGTTGATTCCAAA  CCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACC]
[+] EMBL FR0060577            [                                                                ATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCCCAAGGTTGGCca                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_1997#0 CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGC ATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTT GAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGG GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCC CAAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACC AGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACT TGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGT TTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGC AACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGAT TTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATC ACACCCCCTCGAACC



consensusID : consensus_1997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence
                              [TTACAGCTTTACAAATATTACCAACGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGATGACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC]

[+] EMBL BU807602             [TTACAGCTTTACAAATATTACCAACGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGATGACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC]


>consensus_1997#1 TTACAGCTTTACAAATATTACCAACGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAA AACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCC AGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTT GCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAA GGAGTCATCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCC TCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCA TTCAGGGGTTAAGCTGCATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTC AAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCAC ACTCCAAAGTGGTAGGCAAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGG GTGCTTGTGGAGGAGATGACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTT TGAAGGTGTC



consensusID : consensus_1997#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [TTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAA]

[+] EMBL CA332727             [TTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAA]


>consensus_1997#2 TTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATC GGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCC CAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCA GGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCA AGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATC AAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCAC AACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCA TCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCC CTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1997#0      CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGC 60
consensus_1997#2      ------------------------------------------------------------
consensus_1997#1      ------------------------------------------------------------
                                                                                  

consensus_1997#0      ATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTT 120
consensus_1997#2      ----------------------------------------------------------TT 2
consensus_1997#1      ------------------------------------------------------------
                                                                                  

consensus_1997#0      GAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGG 180
consensus_1997#2      GAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGG 62
consensus_1997#1      ---------------------TTAC-AGCTTTACAAATATTACCAACGTGGTGACATCGG 38
                                             *  *       *  **  * *** **** ********

consensus_1997#0      GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCC 240
consensus_1997#2      GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAA-CAGTTGATTCCAAA--CC 119
consensus_1997#1      GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAA-CAGTTGATTCCAAA--CC 95
                      ***************************************** **************  **

consensus_1997#0      CAAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACC 300
consensus_1997#2      CCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACC 179
consensus_1997#1      CCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACC 155
                      * ********************************************** ***********

consensus_1997#0      AGG------------------GTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 342
consensus_1997#2      AGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 239
consensus_1997#1      AGG------------------GTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 197
                      ***                  ***************************************

consensus_1997#0      AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAAT 402
consensus_1997#2      AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAAT 299
consensus_1997#1      AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAAT 257
                      ************************************************** *********

consensus_1997#0      CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 462
consensus_1997#2      CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 359
consensus_1997#1      CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 317
                      ************************************************************

consensus_1997#0      CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 522
consensus_1997#2      CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 419
consensus_1997#1      CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 377
                      ************************************************************

consensus_1997#0      ATCCAACTCAAAAAA-GATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 581
consensus_1997#2      ATCCAACTCAAAAAA-GATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 478
consensus_1997#1      ATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 437
                      *************** ********************************************

consensus_1997#0      CCCTCAACATCTCCGCATCACACCCCCTCGAACC-------------------------- 615
consensus_1997#2      CCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGC 538
consensus_1997#1      CCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGC 497
                      **********************************                          

consensus_1997#0      ------------------------------------------------------------
consensus_1997#2      AA---------------------------------------------------------- 540
consensus_1997#1      AAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGAT 557
                                                                                  

consensus_1997#0      -----------------------------------------------------
consensus_1997#2      -----------------------------------------------------
consensus_1997#1      GACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC 610
                                                                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)