These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGCATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCCCAAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACC] [+] EMBL CA332795 [CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGCATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGC AAAAACAGTTGATTCCAAA CCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACC] [+] EMBL FR0060577 [ ATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCCCAAGGTTGGCca ] consensusID : consensus_1997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [TTACAGCTTTACAAATATTACCAACGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGATGACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC] [+] EMBL BU807602 [TTACAGCTTTACAAATATTACCAACGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACCAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGATGACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC] consensusID : consensus_1997#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [TTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAA] [+] EMBL CA332727 [TTGAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGGGAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAACAGTTGATTCCAAACCCCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACCAGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTCAAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAATCAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCACAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGCATCCAACTCAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACGCCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1997#0 CAGACGGTACCAGTTGTTGCACATTAAGCTCAAACAGTGGTGAACAAAAACGTTTTTAGC 60 consensus_1997#2 ------------------------------------------------------------ consensus_1997#1 ------------------------------------------------------------ consensus_1997#0 ATTAATAAAATACTGCGCGAAGCTCTAACTGAGAGTTTTAAATTTATAGTCGGAGCACTT 120 consensus_1997#2 ----------------------------------------------------------TT 2 consensus_1997#1 ------------------------------------------------------------ consensus_1997#0 GAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGGGACATCGG 180 consensus_1997#2 GAGATTTGCTCACTAAAGCGACCATGAAAGGAGTAGCTAAAAACAAGGTGGTGACATCGG 62 consensus_1997#1 ---------------------TTAC-AGCTTTACAAATATTACCAACGTGGTGACATCGG 38 * * * ** * *** **** ******** consensus_1997#0 GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAAACAGTTGATTCCAAAACCC 240 consensus_1997#2 GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAA-CAGTTGATTCCAAA--CC 119 consensus_1997#1 GAAGGATGACAGGAAGAGGCAAAACTCAGCCTACGCAAAAA-CAGTTGATTCCAAA--CC 95 ***************************************** ************** ** consensus_1997#0 CAAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACC 300 consensus_1997#2 CCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGCCTCTCAAGACC 179 consensus_1997#1 CCAGGTTGGCAGCCATTCCTGAGCCAGCCTACAGCTTGTACTCTTCAGTCTCTCAAGACC 155 * ********************************************** *********** consensus_1997#0 AGG------------------GTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 342 consensus_1997#2 AGGTCACTTTTCTCCATAAGGGTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 239 consensus_1997#1 AGG------------------GTTTAGACCGATGTGCTGCCTTGCTCGGTGGCATCCTTC 197 *** *************************************** consensus_1997#0 AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAAT 402 consensus_1997#2 AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCAGCAGTCAAAT 299 consensus_1997#1 AAGCCGATGAATCAGACTTGCCAGGTGATCTGGGAGAAGCAAAGGAGTCATCAGTCAAAT 257 ************************************************** ********* consensus_1997#0 CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 462 consensus_1997#2 CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 359 consensus_1997#1 CAAAACTGGGGAAAAAGTTTGCAAAGAAAGCTCCAGCAGCCCCTCATCGACCTGCCGGCA 317 ************************************************************ consensus_1997#0 CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 522 consensus_1997#2 CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 419 consensus_1997#1 CAACTCTAAGAACAAGGCAACACCCCAAAGTTCCAGCTGCCCATTCAGGGGTTAAGCTGC 377 ************************************************************ consensus_1997#0 ATCCAACTCAAAAAA-GATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 581 consensus_1997#2 ATCCAACTCAAAAAA-GATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 478 consensus_1997#1 ATCCAACTCAAAAAAAGATTTCAAACAGAACTTTTACAGCTTCAAACGCCGCGTCACACG 437 *************** ******************************************** consensus_1997#0 CCCTCAACATCTCCGCATCACACCCCCTCGAACC-------------------------- 615 consensus_1997#2 CCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGC 538 consensus_1997#1 CCCTCAACATCTCCGCATCACACCCCCTCGAACCCTGCGTCACACTCCAAAGTGGTAGGC 497 ********************************** consensus_1997#0 ------------------------------------------------------------ consensus_1997#2 AA---------------------------------------------------------- 540 consensus_1997#1 AAGTCGGGGGCTGAATCCAAAAACATGTCCTTTTGGGAACAGGGTGCTTGTGGAGGAGAT 557 consensus_1997#0 ----------------------------------------------------- consensus_1997#2 ----------------------------------------------------- consensus_1997#1 GACCTTATTCCTGTGAGAGACATCGATCCTCAAATCGCCAGTTTGAAGGTGTC 610 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |