These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 645 fasta sequence [GTGTTTGTCAAACATAATAAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGCTAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGCAAACAACCTCTACACATCACTAAAGATTTAGGCCGGTGGAAATCCACCGATGACCTT] [+] EMBL CA590451 [GTGTTTGTCAAACATAATAAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGCTAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGCAAACAACCTCTACACATCACTAAAGATTTAGGC ] [+] EMBL BU806663 [ AAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGCTAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGCAAACAACCTCTACACATCACTAAAGATTTAGGCCGGTGGAAATCCACCGATGACCTT] [+] EMBL FR0060595 [ CTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGGGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGAT ] consensusID : consensus_1998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [AGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTTTGAACAAAACTTTTCTTTTTGTGCTGAAACCTTTTGAGCACCAAAACCAGAATTTGGTCTCTGTATTAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCA] [+] EMBL CA589769 [AGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTTTGAACAAAACTTTTCTTTTTGTGCTGAAACCTTTTGAGCACCAAAACCAGAATTTGGTCTCTGTATTAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1998#0 GTGTTTGTCAAACATAATAAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGC 60 consensus_1998#1 ------------------------------------------------------------ consensus_1998#0 TAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAG 120 consensus_1998#1 --------------AGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAG 46 ********************************************** consensus_1998#0 CTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTC 180 consensus_1998#1 CTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTC 106 ************************************************************ consensus_1998#0 TATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCA 240 consensus_1998#1 TATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCA 166 ************************************************************ consensus_1998#0 CCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAA 300 consensus_1998#1 CCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAA 226 ************************************************************ consensus_1998#0 GATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCG 360 consensus_1998#1 GATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCG 286 ************************************************************ consensus_1998#0 TCCAGGT----------------------------------------------------- 367 consensus_1998#1 TCCAGGTTTGAACAAAACTTTTCTTTTTGTGCTGAAACCTTTTGAGCACCAAAACCAGAA 346 ******* consensus_1998#0 -------------------CAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGC 408 consensus_1998#1 TTTGGTCTCTGTATTAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGC 406 ***************************************** consensus_1998#0 AGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGT 468 consensus_1998#1 AGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGT 466 ************************************************************ consensus_1998#0 TCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTC 528 consensus_1998#1 TCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTC 526 ************************************************************ consensus_1998#0 ACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGC 588 consensus_1998#1 A----------------------------------------------------------- 527 * consensus_1998#0 AAACAACCTCTACACATCACTAAAGATTTAGGCCGGTGGAAATCCACCGATGACCTT 645 consensus_1998#1 --------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |