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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[TTTACAGGCTGTCCTTCACACGTTCGCCTCTCAGTTCAGCGACAACACACTCCAACCGGCCGCCACGACGTTTCCGCCGCAGATTGGACTCATTTCGACGGGTTTAAAAACATTTTTGTGTGTGTTTGTTTTCATCAAGTGATCGCGGAAGCTGCAGGCCGAGCGCCCTTTACGGGGACGCGGAGGTCCCGGACACGCCAAGAGTGACTGGTCCCCCCCCCGACCGACGGTACCGTCCATGGTTGTCTACAGGACGCTTTCTTCTTTTTTAAAGGTCATTTTTCTTTGAATCTGAGGAAGAAACAAGTGACGGATTTTTAGCCAAGGAGATTGAAAAATAGCATGATTCTTTGTGTCCCAGGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGG]
[+] EMBL BU807842 [TTTACAGGCTGTCCTTCACACGTTCGCCTCTCAGTTCAGCGACAACACACTCCAACCGGCCGCCACGACGTTTCCGCCGCAGATTGGACTCATTTCGACGGGTTTAAAAACATTTTTGTGTGTGTTTGTTTTCATCAAGTGATCGCGGAAGCTGCAGGCCGAGCGCCCTTTACGGGGACGCGGAGGTCCCGGACACGCCAAGAGTGACTGGTCCCCCCCCCGACCGACGGTACCGTCCATGGTTGTCTACAGGACGCTTTCTTCTTTTTTAAAGGTCATTTTTCTTTGAATCTGAGGAAGAAACAAGTGACGGATTTTTAGCCAAGGAGATTGAAAAATAGCATGATTCTTTGTGTCCCAGGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGG]
consensusID : consensus_2#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[GAAAGATTCTTTTAATCAATAAATAAAATCCGATTTTTCCTTTTCTGCCAGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGTATGGTGTGAAAGCACCAGAGGCGATAAACTCTGGGAGCCACTAACTGCCTGGGTTTATAGCACAGTGTGTGTTTAAATTCCAAATCGGTGTCACGGTTCTGGTGAAATCCACGTGAACTGAGTCCACTCACAGAATTGTGTCTGCGCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGGCCCACCAGCATACGCATCCAGTACAGCAGCGCCCAGTTTCTCCTGGACTCCAGCTCCCCGGCCCGG]
[+] EMBL CA331231 [GAAAGATTCTTTTAATCAATAAATAAAATCCGATTTTTCCTTTTCTGCCAGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGTATGGTGTGAAAGCACCAGAGGCGATAAACTCTGGGAGCCACTAACTGCCTGGGTTTATAGCACAGTGTGTGTTTAAATTCCAAATCGGTGTCACGGTTCTGGTGAAATCCACGTGAACTGAGTCCACTCACAGAATTGTGTCTGCGCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGGCCCACCAGCATACGCATCCAGTACAGCAGCGCCCAGTTTCTCCTGGACTCCAGCTCCCCGGCCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2#0 TTTACAGGCTGTCCTTCACACGTTCGCCTCTCAGTTCAGCGACAACACACTCCAACCGGC 60
consensus_2#1 ------------------------------------------------------------
consensus_2#0 CGCCACGACGTTTCCGCCGCAGATTGGACTCATTTCGACGGGTTTAAAAACATTTTTGTG 120
consensus_2#1 -----------------------------------------------------------G 1
*
consensus_2#0 TGTGTTTGTTTTCATCAAGTGATCGCGGAAGCTGCAGGCCGAGCGCCCTTTACGGGGACG 180
consensus_2#1 AAAGATTCTTTTAATCAATAAAT-----AAAATCCGATTT---TTCCTTTTCTGCCAGTC 53
* ** **** ***** ** ** * * ** *** *
consensus_2#0 CGGAGGTCCCGGACACGCCAAGAGTGACTGGTCCCCCCCCCGACCGACGGTACCGTCCAT 240
consensus_2#1 CGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGG-GCAGGAACT 112
** * * * * * * * *** **** * * * *** * * *
consensus_2#0 GGTTGTCTACAGGACGCTTTCTTCTTTTTTAAAGGTCATTTTTCTTTGAATCTGAGGAAG 300
consensus_2#1 GGAACCCC------CACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAG 166
** * * ** * * ** * *** * * *** * ***
consensus_2#0 AAACAAGTGACGGATTTTTAGCCAAGGAGATTGAAAAATAGCATGATTCTTTGTGTCCCA 360
consensus_2#1 GACCTGCGGGCGA-----TCGCCAGCAACTTCTGCTACTTGGAAAATTCAG-GTAT---- 216
* * * ** * **** * * * * * * **** ** *
consensus_2#0 GGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGA 420
consensus_2#1 GGTGTGAAAGCACCA---GAGGCGATAAACTCTGGGAGCC------ACTAACTGCCTGGG 267
*** ** ***** * ** * *** ** * * * * **
consensus_2#0 ACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGAC 480
consensus_2#1 TTTATAGC----ACAGTGTGTGTTTAAATTCCAAATCGGTGTCACGGTTCTGGTGAAATC 323
* * * ** ** ** * * * *** * * * * * *
consensus_2#0 CTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGATGGTACTGGGGGGCC 540
consensus_2#1 C---ACGTGAACTGAGTCCACTCACAGAATTGTGTCTGCGCAGGATGGTACTGGGGGGCC 380
* * ** * * *** * * * ********************
consensus_2#0 ATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTA 600
consensus_2#1 ATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTA 440
************************************************************
consensus_2#0 CGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGG--- 657
consensus_2#1 CGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGGCCC 500
*********************************************************
consensus_2#0 ------------------------------------------------------------
consensus_2#1 ACCAGCATACGCATCCAGTACAGCAGCGCCCAGTTTCTCCTGGACTCCAGCTCCCCGGCC 560
consensus_2#0 ---
consensus_2#1 CGG 563
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |