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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 781 fasta sequence
[TATAATACCGTTTCCCTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCATCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGCAGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGACCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACATCGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT]
[+] EMBL BU806464 [TATAATACCGTTTCCCTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCATCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGCAGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAAT ]
[+] EMBL CA591145 [ AGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCAGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGACCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACATCGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT]
[+] EMBL FR0061139 [ GGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCA ]
consensusID : consensus_2010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGTGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGT]
[+] EMBL CA330823 [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGTGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2010#0 ---------------------------------------------TATAATACCGTTTCC 15
consensus_2010#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60
* * *
consensus_2010#0 CTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCA 75
consensus_2010#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120
* ** * * * * * * * * ** * * *
consensus_2010#0 TCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGC 135
consensus_2010#1 GAGAGAGAGAGAGAGAGAGAGA-GAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACG 179
* ** ** * * * * ** * * * *** *** **
consensus_2010#0 AGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTG 195
consensus_2010#1 AG--ACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTG 237
** ********************************************************
consensus_2010#0 CGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTC 255
consensus_2010#1 TGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTC 297
* **************************** ****************************
consensus_2010#0 GGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCG 315
consensus_2010#1 GGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCG 357
***************************************************** ******
consensus_2010#0 GAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGA 375
consensus_2010#1 GAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGA 417
************************************************************
consensus_2010#0 TCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCG 435
consensus_2010#1 TCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCG 477
************************************************************
consensus_2010#0 CAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCAT 495
consensus_2010#1 CAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCAT 537
************************************************************
consensus_2010#0 GGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCA 555
consensus_2010#1 GGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCA 597
************************** *********************************
consensus_2010#0 GCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTG 615
consensus_2010#1 GCACGTGATCGACTGTGGT----------------------------------------- 616
*******************
consensus_2010#0 GGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGA 675
consensus_2010#1 ------------------------------------------------------------
consensus_2010#0 CCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACAT 735
consensus_2010#1 ------------------------------------------------------------
consensus_2010#0 CGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT 781
consensus_2010#1 ----------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |