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Takifugu rubripes
cluster # 2014 cluster # 2014       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2014#0 length = 630 sequences # 3  
consensus_2014#1 length = 284 sequences # 1  

consensusID : consensus_2014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 630
fasta sequence
                              [TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGCAAGCATATGAAAGTGGTCTTCTTTGGGAGG]

[+] EMBL CA332941             [TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGCAAGCATATGAAAGTGGTCTTCTTTGGGAGG]
[+] EMBL BU807566             [     GGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCATGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGATCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTG                                                                  ]
[+] EMBL FR0060431            [                                                                                                  gTTTGGACGTCGTTTGTGATTCTCACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGAATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCG                                                                                                                                                                                                                                          ]


>consensus_2014#0 TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCG TCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTC TGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCG CTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCA GTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGAC CCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGA AAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACT GCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCC TCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAG GTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGC AAGCATATGAAAGTGGTCTTCTTTGGGAGG



consensusID : consensus_2014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence
                              [CCTTTGCCAAATGCCTTAGTCGCCGAGGGTTGGATGAAAGGCACACTTTATCTGTGTCGCACTCCGGAATTTTTAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGG]

[+] EMBL FR0062497            [CCTTTGCCAAATGCCTTAGTCGCCGAGGGTTGGATGAAAGGCACACTTTATCTGTGTCGCACTCCGGAATTTTTAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGG]


>consensus_2014#1 CCTTTGCCAAATGCCTTAGTCGCCGAGGGTTGGATGAAAGGCACACTTTATCTGTGTCGC ACTCCGGAATTTTTAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTT AGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACC CGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCT GGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2014#0      TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCG 60
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      TCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTC 120
consensus_2014#1      ------------CCTTTG---CCAAATGCCTTAGTCG---CCGAGGGTTGGATGAAAGGC 42
                                  *  **    ****   *  ** * *     *   ** *  **  *  *

consensus_2014#0      TGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCG 180
consensus_2014#1      ACACTTTATCTGTG---TCGCACTCCGGAATT--TTTAAATTTAATGACATTCGCCATCG 97
                        **    *** **   *** * *   *  *    * ***********************

consensus_2014#0      CTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCA 240
consensus_2014#1      CTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCA 157
                      ************************************************************

consensus_2014#0      GTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGAC 300
consensus_2014#1      GTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGAC 217
                      ************************************************************

consensus_2014#0      CCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGA 360
consensus_2014#1      CCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGA 277
                      ************************************************************

consensus_2014#0      AAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACT 420
consensus_2014#1      AAGAAGG----------------------------------------------------- 284
                      *******                                                     

consensus_2014#0      GCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCC 480
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      TCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAG 540
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      GTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGC 600
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      AAGCATATGAAAGTGGTCTTCTTTGGGAGG 630
consensus_2014#1      ------------------------------
                                                    




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)