These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 636 fasta sequence [TCACCTTGACTAATATCGACAGTCAGCAGTTATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGCAGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGCTCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCTCTACTCAGATGACCAGGGTCGGTTGTTTC] [+] EMBL CA333162 [TCACCTTGACTAATATCGACAGTCAGCAGTTATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACG ] [+] EMBL BU807499 [ GTTATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAGTCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGCAGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGCTCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCT ] [+] EMBL CA590731 [ ATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGCAGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGCTCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCTCTACTCAGATGACCAGGGTCGGTTGTTTC] consensusID : consensus_2038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CATCAACATTTTGCAGTTTCACGGTTATATATGGCATGTTTGTGGTTCAGGCACCAAAAACGCCAAACCGTGCGCTTCAACGTGGACTGAGTTACTGCCACGATTTTCTGTGACGTTCAGATGTGCGGGGCCTCGGCGGAGTCTGCTCCGAACCTTGAGCAGGATCTGCCGCTGATCTATGAATGACCTTTGAAATGATTCACAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTG] [+] EMBL CA590497 [CATCAACATTTTGCAGTTTCACGGTTATATATGGCATGTTTGTGGTTCAGGCACCAAAAACGCCAAACCGTGCGCTTCAACGTGGACTGAGTTACTGCCACGATTTTCTGTGACGTTCAGATGTGCGGGGCCTCGGCGGAGTCTGCTCCGAACCTTGAGCAGGATCTGCCGCTGATCTATGAATGACCTTTGAAATGATTCACAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2038#0 ------------------------------------------------------------ consensus_2038#1 CATCAACATTTTGCAGTTTCACGGTTATATATGGCATGTTTGTGGTTCAGGCACCAAAAA 60 consensus_2038#0 ------------------------------------------------------------ consensus_2038#1 CGCCAAACCGTGCGCTTCAACGTGGACTGAGTTACTGCCACGATTTTCTGTGACGTTCAG 120 consensus_2038#0 -----------------------------TCACCTTGACTAATATCGACAGTCAGCAGTT 31 consensus_2038#1 ATGTGCGGGGCCTCGGCGGAGTCTGCTCCGAACCTTGAGCAGGATCTGCCGCTGAT--CT 178 ******* * *** * * * consensus_2038#0 ATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAG 91 consensus_2038#1 ATGAATGACCTTTGAAATGATTCACAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAG 238 *** * ** * * ** ************************************ consensus_2038#0 ATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGG 151 consensus_2038#1 ATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGG 298 ************************************************************ consensus_2038#0 CCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATC 211 consensus_2038#1 CCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATC 358 ************************************************************ consensus_2038#0 TGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCA 271 consensus_2038#1 TGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCA 418 ************************************************************ consensus_2038#0 CCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGA 331 consensus_2038#1 CCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGA 478 ************************************************************ consensus_2038#0 TAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAG 391 consensus_2038#1 TAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTG---------------- 522 ******************************************** consensus_2038#0 GTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGG 451 consensus_2038#1 ------------------------------------------------------------ consensus_2038#0 GAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGC 511 consensus_2038#1 ------------------------------------------------------------ consensus_2038#0 AGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGC 571 consensus_2038#1 ------------------------------------------------------------ consensus_2038#0 TCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCTCTACTCAGATGACCAGGGTCGGTT 631 consensus_2038#1 ------------------------------------------------------------ consensus_2038#0 GTTTC 636 consensus_2038#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |