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Takifugu rubripes
cluster # 2046 cluster # 2046       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2046#0 length = 618 sequences # 3  
 consensus_2046#1 length = 188 sequences # 1  
consensusID : consensus_2046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 618
fasta sequence 
                              [CTACTTCTTTATTGGCTTTTGTGGGGGTCTGCTCTTTGTTTGCCCGCAGCTAAATTTCCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCGTGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCTTCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCGACCGCATCGCCACCATCGAACACGAGTTCCTCCACGCTCTGGGTTTCTGGCACGAGCAGTCGAGAGCCGATCGGGACGATTACGTCAAAATCATGTGGGACCGCATCACAGAGGATAAACAGCACAACTTCAACACCTACAACGACACCACCTCCAGCTCCCTGGGAGTACCGTACGACTATGGCTCCATGATGCACTAC]

[+] EMBL CA845004             [CTACTTCTTTATTGGCTTTTGTGTGGTTCTGCTCTTTGTTTGCCCGCAGCTAAATTTCCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCGTGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCTTCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCGACCGCATCGCCACCATCGAACACGAGTTCCTCCACGCTCTGGGTTTCTGGCACGAGCAGTCGAGAGCCGATCGGGACGATTACGTCAAAATCATGTGGGACCGCATCACAGAGGATAAACAGCACAACTTCAACACCTACAACGACACCACCTCCAGCTCCCTGGGAGTACCGTACGACTATGGCTCCATGATGCACTAC]
[+] EMBL FR0059488            [                  TTGTGGGGGTCTGCTCTTTGTTTGCCCGCAGCTAAATTTCCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATT                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA591682             [                                     GTTTGCCCGCAGCTAAATTTTCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCGTGGAAGGAGACATCGTGGTTGACGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGATCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCTTCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCG                                                                                                                                                                                                        ]




>consensus_2046#0
CTACTTCTTTATTGGCTTTTGTGGGGGTCTGCTCTTTGTTTGCCCGCAGCTAAATTTCCA
GACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGG
TTGGATCTCGTGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTCCATAATA
GGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTT
AACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCGAC
TTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCTTC
TCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCGAC
CGCATCGCCACCATCGAACACGAGTTCCTCCACGCTCTGGGTTTCTGGCACGAGCAGTCG
AGAGCCGATCGGGACGATTACGTCAAAATCATGTGGGACCGCATCACAGAGGATAAACAG
CACAACTTCAACACCTACAACGACACCACCTCCAGCTCCCTGGGAGTACCGTACGACTAT
GGCTCCATGATGCACTAC

consensusID : consensus_2046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence 
                              [TGGGGATCTGCTCGTTTGGGTGCGCTCAACTAAATTTCCATACCATCACCTCCACCATCNTCTTTATTTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGGAGCAAACTCGAAATTCTCATAATAGGGGATGAGNACAGGCTGGCCAAGACG]

[+] EMBL FR0059647            [TGGGGATCTGCTCGTTTGGGTGCGCTCAACTAAATTTCCATACCATCACCTCCACCATCNTCTTTATTTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGGAGCAAACTCGAAATTCTCATAATAGGGGATGAGNACAGGCTGGCCAAGACG]




>consensus_2046#1
TGGGGATCTGCTCGTTTGGGTGCGCTCAACTAAATTTCCATACCATCACCTCCACCATCN
TCTTTATTTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCATGGAAGGAGA
CATCGTGGTTGATGAGGAGCAAACTCGAAATTCTCATAATAGGGGATGAGNACAGGCTGG
CCAAGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2046#0      CTACTTCTTTATTGGCTTTTGTGGGGGTCTGCTC-TTTGTTTGCCCGCAGCTAAATTTCC 59
consensus_2046#1      ---------------------TGGGGATCTGCTCGTTTGGGTGCGCTCAACTAAATTTCC 39
                                           ***** ******* ****  *** * ** **********

consensus_2046#0      AGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGG 119
consensus_2046#1      ATACCATCACCTCCACCATCNTCTTTATTTGGACATTTTTGACATAAACGAAGCGGAAGG 99
                      * ***** *  *  **  *   *   ** *******************************

consensus_2046#0      GTTGGATCTCGTGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTC-CATAA 178
consensus_2046#1      GTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGGAGCAAACTCGAAATTCTCATAA 159
                      ********** **************************  *************** *****

consensus_2046#0      TAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGG 238
consensus_2046#1      TAGGGGATGAGNACAGGCTGGCCAAGACG------------------------------- 188
                      *********** *****  * ********                               

consensus_2046#0      TTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCG 298
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      ACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCT 358
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      TCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCG 418
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      ACCGCATCGCCACCATCGAACACGAGTTCCTCCACGCTCTGGGTTTCTGGCACGAGCAGT 478
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      CGAGAGCCGATCGGGACGATTACGTCAAAATCATGTGGGACCGCATCACAGAGGATAAAC 538
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      AGCACAACTTCAACACCTACAACGACACCACCTCCAGCTCCCTGGGAGTACCGTACGACT 598
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      ATGGCTCCATGATGCACTAC 618
consensus_2046#1      --------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)