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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1579 fasta sequence
[GTCTGTCATCATGAATACCTCTACAAGTTTGAGGGTGCGCTTGCCTGCACTTGTGCTAGTGCTGCAGGTTGTCATCATAACTCTTTACGCTCTCTTTGTTACTTACGATGACAATGCAGACGCTAAAATGCAGAACAATGAGACAAACCCGATGGAGAACTCCGTTTATCGCGACTACCCGTTTTTTGCCGACGTGCAGGTGATGATCTTCATAGGTTTTGGCTGCCTGTTGGCCTTTTTTCGTTTTTACGGCTTCAGCGGAATGGTCTTCAATTTTCTGACAGCTACATTCACCATCCAGTGGGCCATCCTTGTGCAGGGATTCTTCCAGTTTTACTATGATGGTAAAATTCGCCTGGGGGTGATCAACCTTGTGAATGCAGAGTTTGCCTGTGCCGTGATCCTCATTTCTTTTGGTGCTGTGCTGGGCAAGACGAGCCCTGTCCAGCTCTTGTTCATGGCTATACTGGAGGTCCCTTTCTTTGCTGTGACAGAGTGGGCTGTGTTGAAATACCTGAGGATCAATGACGCAGGGGGTTCCATTCTTATTCACCTGTTTGCCTGCTACTTTGGCCTGGGGGTGACATTTGTGCTGTACCGCCCAGTTTTAAATAAGGGGCATGCAAAAGAGATCACCAGCTACCATTCTGACATCCTCTCTGTAATGGGGACCCTGTTCCTGTGGGTGTTCTGGCCTTCGTTCAACTCTGCTCTGACCATAAAAGGCGATGACCAGCACAGGGCAATTCTCCACACTTTCATCGGTCTGAGCTCCTCCACCATCACCGCCTTTGCCCTCTCGGCATTGTTCAACAAAAGAGGAAAACTCACGATGGCTGATATTCAGAATGTGACTCTAGCCGGAGGTGTAACTGTGGGGGCATCTGCGGACATGATGATTTCCCCTGTAGCTGCATATGTACTAGGCATTATGGGCTGTACTGCCTGTTTCTTTGGCTACAGGTACCTGTCACCTTTTCTGGCCCAGAACATGAGGATCCAAGACCAGTGTGGGATTCACAATCTCCACGGGCTGACAGGCCTCATTTCCTCCACGGCAGGGATCTGTGCCATCCTCCTGGCCAATGAGGAAACCTACGGGCCCAGCATGTACCAGATCTTCTCCCATCGAGCGCCACCTTTGGGTGATCCAAAGCTGCTGGAACTGCAGAAGCTGATACCCGGGCTGAAACCGGGCTTGGGGCGCTCTGCGGAGGAGCAGGCCATGTACCAGCTGGCAGCCATGGCCTCCACCATAGCAGCAGCTACGATCGGCGGGCTGATCACAGGGTGGGTCATGAGGCTCCCCTTCATGGCGTCGCCGCCCGACGGCGACTGTTTTGACGACGAGCTGTTCTTCGACCTGCCGCCTGACGCCGGCACAACGGCGCTCAGCGACACCAAAATCTTTGATGGAAAACTGAAAATGAACTCAGTGTGAACTTTTGAACAGGCATTACATCTAAGATCTTTTATTCAAATGTTTTTATTTGTTATTTAAAGAGAAAAAAGTAGCTTAATGCCAATGTTTGTATCACCAATGACACGTTAATGATTACTGCTTGAGGATACCTGTAAA]
[+] EMBL AY116072 [GTCTGTCATCATGAATACCTCTACAAGTTTGAGGGTGCGCTTGCCTGCACTTGTGCTAGTGCTGCAGGTTGTCATCATAACTCTTTACGCTCTCTTTGTTACTTACGATGACAATGCAGACGCTAAAATGCAGAACAATGAGACAAACCCGATGGAGAACTCCGTTTATCGCGACTACCCGTTTTTTGCCGACGTGCAGGTGATGATCTTCATAGGTTTTGGCTGCCTGTTGGCCTTTTTTCGTTTTTACGGCTTCAGCGGAATGGTCTTCAATTTTCTGACAGCTACATTCACCATCCAGTGGGCCATCCTTGTGCAGGGATTCTTCCAGTTTTACTATGATGGTAAAATTCGCCTGGGGGTGATCAACCTTGTGAATGCAGAGTTTGCCTGTGCCGTGATCCTCATTTCTTTTGGTGCTGTGCTGGGCAAGACGAGCCCTGTCCAGCTCTTGTTCATGGCTATACTGGAGGTCCCTTTCTTTGCTGTGACAGAGTGGGCTGTGTTGAAATACCTGAGGATCAATGACGCAGGGGGTTCCATTCTTATTCACCTGTTTGCCTGCTACTTTGGCCTGGGGGTGACATTTGTGCTGTACCGCCCAGTTTTAAATAAGGGACATGCAAAAGAGATCACCAGCTACCATTCTGACATCCTCTCTGTAATGGGGACCCTGTTCCTGTGGGTGTTCTGGCCTTCGTTCAACTCTGCTCTGACCATAAAAGGCGATGACCAGCACAGGGCAATTCTCCACACTTTCATCGGTCTGAGCTCCTCCACCATCACCGCCTTTGCCCTCTCGGCATTGTTCAACAAAAGAGGAAAACTCACGATGGCTGATATTCAGAATGTGACTCTAGCCGGAGGTGTAACTGTGGGGGCATCTGCGGACATGATGATTTCCCCTGTAGCTGCATATGTACTAGGCATTATGGGCTGTACTGCCTGTTTCTTTGGCTACAGGTACCTGTCACCTTTTCTGGCCCAGAACATGAGGATCCAAGACCAGTGTGGGATTCACAATCTCCACGGGCTGACAGGCCTCATTTCCTCCACGGCAGGGATCTGTGCCATCCTCCTGGCCAATGAGGAAACCTACGGGCCCAGCATGTACCAGATCTTCTCCCATCGAGCGCCACCTTTGGGTGATCCAAAGCTGCTGGAACTGCAGAAGCTGATACCCGGGCTGAAACCGGGCTTGGGGCGCTCTGCGGAGGAGCAGGCCATGTACCAGCTGGCAGCCATGGCCTCCACCATAGCAGCAGCTACGATCGGCGGGCTGATCACAGGGTGGGTCATGAGGCTCCCCTTCATGGCGTCGCCGCCCGACGGCGACTGTTTTGACGACGAGCTGTTCTTCGACCTGCCGCCTGACGCCGGCACAACGGCGCTCAGCGACACCAAAATCTTTGATGGAAAACTGAAAATGAACTCAGTGTGAACTTTTGAACAGGCATTACATCTAAGATCTTTTATTCAAATGTTTTTATTTGTTATTTAAAGAGAAAAAAGTAGCTTAATGCCAATGTTTGTATCACCAATGACACGTTAATGATTACTGCTTGAGGATACCTGTAAA]
[+] EMBL CA845011 [ TCTTTGCTGTGACAGAGTGGGCTGTGTTGAAATACCTGAGGATCAATGACGCAGGGGGTTCCATTCTTATTCACCTGTTTGCCTGCTACTTTGGCCTGGGGGTGACATTTGTGCTGTACCGCCCAGTTTTAAATAAGGGGCATGCAAAAGAGATCACCAGCTACCATTCTGACATCCTCTCTGTAATGGGGACCCTCTTCCTGTGGGTGTTCTGGCCTTCGTTCAACTCTGCTCTGACCATAAAAGGCGATGACCAGCACAGGGCAATTCTCCACACTTTCATCGGTCTGAGCTCCTCCACCATCACCGCCTTTGCCCTCTCGGCATTGTTCAACAAAAGAGGAAAACTCACGATGGCTGATATTCAGAATGTGACTCTAGCCGGAGGTGTAACTGTGGGGGCATCTGCGGACATGATGATTTCCCCTGTAGCTGCATATGTACTAGGCATTATGGGCTGTACTGCCTGTTTCTTTGGCTACAGGTACCTGTCACCTTTTCTGGCCCAGAACATGAGGATCCAAGACCAGTGTGGGATTCACAATCTCCACGGGCTGACAGGCCTCATTTCCTCCACGGCAGGGATCTGTGCCATCCTCCTG ]
[+] EMBL CA844986 [ GCTCCTCCACCATCACCGCCTTTGCCCTCTCGGCATTGTTCAACAAAAGAGGAAAACTCACGATGGCTGATATTCAGAATGTGACTCTAGCCGGAGGTGTAACTGTGGGGGCATCTGCGGACATGATGATTTCCCCTGTAGCTGCATATGTACTAGGCATTATGGGCTGTACTGCCTGTTTCTTTGGCTACAGGTACCTGTCACCTTTTCTGGCCCAGAACATGAGGATCCAAGACCAGTGTGGGATTCACAATCTCCACGGGCTGACAGGCCTCATTTCCTCCACGGCAGGGATCTGTGCCATCCTCCTGGCCAATGAGGAAACCTACGGGCCCAGCATGTACCAGATCTTCTCCCATCGAGCGCCACCTTTGGGTGATCCAAAGCTGCTGGAACTGCAGAAGCTGATACCCGGGCTGAAACCGGGCTTGGGGCGCTCTGCGGAGGAGCAGGCCATGTACCAGCTGGCAGCCATGGCCTCCACCATAGCAGCAGCTACGATCGGCGGGCTGATCACAGGGTGGGTCATGAGGCTCCCCTTCATGGCGTCGCCGCCCGACGGCGACTGTTTTGACGACGAGCTGTTCTTCGACCTGCCGCCTGACGCCGGCACAACGGCGCTCAGCG ]
consensusID : consensus_2060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 67 fasta sequence
[TATCACCAATGACACGTTCATGATTACTGCTTGAGGATACCTGTAAACTGAAATAAAGCCCATTAAA]
[+] EMBL CA845126 [TATCACCAATGACACGTTCATGATTACTGCTTGAGGATACCTGTAAACTGAAATAAAGCCCATTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2060#0 GTCTGTCATCATGAATACCTCTACAAGTTTGAGGGTGCGCTTGCCTGCACTTGTGCTAGT 60
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 GCTGCAGGTTGTCATCATAACTCTTTACGCTCTCTTTGTTACTTACGATGACAATGCAGA 120
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CGCTAAAATGCAGAACAATGAGACAAACCCGATGGAGAACTCCGTTTATCGCGACTACCC 180
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 GTTTTTTGCCGACGTGCAGGTGATGATCTTCATAGGTTTTGGCTGCCTGTTGGCCTTTTT 240
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 TCGTTTTTACGGCTTCAGCGGAATGGTCTTCAATTTTCTGACAGCTACATTCACCATCCA 300
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 GTGGGCCATCCTTGTGCAGGGATTCTTCCAGTTTTACTATGATGGTAAAATTCGCCTGGG 360
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 GGTGATCAACCTTGTGAATGCAGAGTTTGCCTGTGCCGTGATCCTCATTTCTTTTGGTGC 420
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 TGTGCTGGGCAAGACGAGCCCTGTCCAGCTCTTGTTCATGGCTATACTGGAGGTCCCTTT 480
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CTTTGCTGTGACAGAGTGGGCTGTGTTGAAATACCTGAGGATCAATGACGCAGGGGGTTC 540
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CATTCTTATTCACCTGTTTGCCTGCTACTTTGGCCTGGGGGTGACATTTGTGCTGTACCG 600
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CCCAGTTTTAAATAAGGGGCATGCAAAAGAGATCACCAGCTACCATTCTGACATCCTCTC 660
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 TGTAATGGGGACCCTGTTCCTGTGGGTGTTCTGGCCTTCGTTCAACTCTGCTCTGACCAT 720
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 AAAAGGCGATGACCAGCACAGGGCAATTCTCCACACTTTCATCGGTCTGAGCTCCTCCAC 780
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CATCACCGCCTTTGCCCTCTCGGCATTGTTCAACAAAAGAGGAAAACTCACGATGGCTGA 840
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 TATTCAGAATGTGACTCTAGCCGGAGGTGTAACTGTGGGGGCATCTGCGGACATGATGAT 900
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 TTCCCCTGTAGCTGCATATGTACTAGGCATTATGGGCTGTACTGCCTGTTTCTTTGGCTA 960
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CAGGTACCTGTCACCTTTTCTGGCCCAGAACATGAGGATCCAAGACCAGTGTGGGATTCA 1020
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CAATCTCCACGGGCTGACAGGCCTCATTTCCTCCACGGCAGGGATCTGTGCCATCCTCCT 1080
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 GGCCAATGAGGAAACCTACGGGCCCAGCATGTACCAGATCTTCTCCCATCGAGCGCCACC 1140
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 TTTGGGTGATCCAAAGCTGCTGGAACTGCAGAAGCTGATACCCGGGCTGAAACCGGGCTT 1200
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 GGGGCGCTCTGCGGAGGAGCAGGCCATGTACCAGCTGGCAGCCATGGCCTCCACCATAGC 1260
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 AGCAGCTACGATCGGCGGGCTGATCACAGGGTGGGTCATGAGGCTCCCCTTCATGGCGTC 1320
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 GCCGCCCGACGGCGACTGTTTTGACGACGAGCTGTTCTTCGACCTGCCGCCTGACGCCGG 1380
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 CACAACGGCGCTCAGCGACACCAAAATCTTTGATGGAAAACTGAAAATGAACTCAGTGTG 1440
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 AACTTTTGAACAGGCATTACATCTAAGATCTTTTATTCAAATGTTTTTATTTGTTATTTA 1500
consensus_2060#1 ------------------------------------------------------------
consensus_2060#0 AAGAGAAAAAAGTAGCTTAATGCCAATGTTTGTATCACCAATGACACGTTAATGATTACT 1560
consensus_2060#1 --------------------------------TATCACCAATGACACGTTCATGATTACT 28
****************** *********
consensus_2060#0 GCTTGAGGATACCTGTAAA-------------------- 1579
consensus_2060#1 GCTTGAGGATACCTGTAAACTGAAATAAAGCCCATTAAA 67
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |