These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [TTTTTTGAGGGGTGCAAATAGTCCTAATTTAGATCCACACGTACACATTTTTGCTAGCAACAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCTCCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAATCCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTTCAAATTGGATTATTTGATAATCCAGGACGGATCTTTCTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACCCAGGTACCTTTCTGCTGCCTCCACCAGGTTTCTGTGATTAACGGCGAAGAGTTTTTCTCTGTGGTGCTGCTTCATCTGGTCCGTGACTCCACTCAGGAAACGACTCATTCCTTTGTCTGCGGGGGCCACAGGCGAGTCGACAGACGAGAAGACGGACAGTTTGGCCTCGTCCACGTCCTGCTGGGTGAACTGGCCCGAACTGGCCCAGTCCACACTTTC] [+] EMBL CA331205 [TTTTTTGAGGGGTGCAAATAGTCCTAATTTAGATCTACACGTACACATTTTTGCTAGCAACAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCTCCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAATCCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGTTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCT CCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTTTAAATTGGATTATTTGATAATCCAGGACGGATCTTTCTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACCCAGGTACCTTTCTGCTGCCTCCACCAGGTTTCTGTGATTAACGGCGAAGAGTTTTTCTCTGTGGTGCTGCTTCATCTGGTCCGTGACTCCACTCAGGAAACGACTCATTCCTTTGTCTGCGGGGGCCACAGGCGAGTCGACAGACGAAAAGACGGACAGTTTGGCCTCGTCCACGTCCTGCTGGGTGAACTGGCCCCAACTTGCCCAATCCACACTTTC] [+] EMBL CA329862 [ TGCAAATAGTTTTAATTTTGATCCACACGTACACATTTTTGCTAGCAACAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCTCCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAATCCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACATTTGTTTCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTTCAAATTGGATTATTTGATAATCCAGGACGGATCTTTCTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACCCAAGTACCTTTCTGCTGCCTCCACCAGGTTTCTGTGATTAACGGCGAAGAGTTTTTCTCTGTGTTGCTGCTTCATCTGGTCCGTGACTCCACTCAGGAAACGACTCATTCCTTTGTCTGCGGGGGCCACAGGCGAGTCGACAGACGAGAAAACGGACAGTTTGGCCTCGTCCACGTCCTGCTGGGTGAACTGTCCCGACTTGGCCCAGTCCAC ] consensusID : consensus_2069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence [TACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTGCAGATCATTAGAAGTTACAGATTAGTCAGAAAAGAATCTTTATTTTAGGAAATGACAGAAGAAACTTGCCAGAATGTTGTTGCGCAGAAGCAGAGCCGAGGTTGTGTTCTCGCTCCCATGATATTATTAGTAATATAAGAGTATTTAAGTGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAGCGAGCCGACGGTGGCTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTATGGCAGAAGCTTCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTCTCTGCCGCTGTGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAACCCTGTGTGGGGCCGGTGCGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTGTGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT] [-] EMBL CA332485 [TACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTGCAGATCATTAGAAGTTACAGATTAGTCAGAAAAGAATCTTTATTTTAGGAAATGACAGAAGAAACTTGCCAGAATGTTGTTGCGCAGAAGCAGAGCCGAGGTTGTGTTCTCGCTCCCATGATATTATTAGTAATATAAGAGTATTTAAGTGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAGCGAGCCGACGGTGGCTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTATGGCAGAAGCTTCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTCTCTGCCGCTGTGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAACCCTGTGTGGGGCCGGTGCGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTGTGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT] [+] EMBL FR0062314 [ TGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAGCGAGCCGACGGTGGCTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTATGGCAGAAGCTTCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTCTCTGCCGCTGTGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAACCCTGTGTGGGGCCGGTGCGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTGTGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2069#0 TTTTTTGAGGGGTGCAAATAGTCCTAATTTAGATCCACACGTACACATTTTTGCTAGCAA 60 consensus_2069#1 -TACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGC-GCACGTGC 58 * ** * * * * * * ** * * **** * ** * consensus_2069#0 CAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCT 120 consensus_2069#1 GACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGC-----TCCCCCCCCCGACAGCGC 113 * ** ** * ** ** * * * ** * ** * * consensus_2069#0 CCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAAT 180 consensus_2069#1 CAGTGTCCCCGAACCAGCTGCAGATCATTAGAAGTTACAGATTAGTCA---GAAAAGAAT 170 * * * * ** ** * * * * ** * * * ** * *** consensus_2069#0 CCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGA-CGCCGGTCAGCTGGAACACGTGG 239 consensus_2069#1 CTTTATTTTAGGAAATGACAGAAGAAACTTGCCAGAATGTTGTTGCGCAGAAGCA-GAGC 229 * * ** ** ** ** * ** * * * ** * * ** * * consensus_2069#0 CGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACA 299 consensus_2069#1 CGAGGTTGTGTTCTCGCTCCCATGATATTATTAGTAATATAAGAGTATTTA--------A 281 ** ** * * * * * * * * *** * consensus_2069#0 GCGCCAGTGTCCCCGAACCAGCTTCAAATTGGATTATTTGATAATCCAGGACGGATCTTT 359 consensus_2069#1 GTGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAG--CGAGCCGACGGTGG 339 * * ***** * * * * * ***** * * * * * ** * consensus_2069#0 CTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACC 419 consensus_2069#1 CTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTA-TGGCAGAAGCT 398 **** * ** * * *** ** ** ** * **** ** * consensus_2069#0 CAGGTACCTTTCTGCTGCCTCCACCAGGTT-TCTGTGATTAACGGCGAAGAGTTTTTCTC 478 consensus_2069#1 TCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTC 458 * ** * ** * **** * *** * * * * * ** ** consensus_2069#0 TGTGGTGCTGCTTCATCTGGTCCGTGACTCCACTCA-GGAAACGACTCATTC-CTTTGTC 536 consensus_2069#1 TCTGCCGCTG--TGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAAC 516 * ** **** * *** * * * * * * ** * ** * * * * consensus_2069#0 TGCGGGGGCCACAGGCGAGTCGACAGACGAGAAGACGGACAGTTTGGCCTCGTCCACGTC 596 consensus_2069#1 CCTGTGTGGGGCCGGTG---CGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTG 573 * * * * ** * ** **** * * * ** * * * ** consensus_2069#0 CTGCTGGGTGAACTGGCCCGAACTGGCCCAGTCCACACTTTC 638 consensus_2069#1 -TGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT- 613 *** * **** ** * * * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |