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Takifugu rubripes
cluster # 2083 cluster # 2083       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2083#0 length = 660 sequences # 2  
consensus_2083#1 length = 447 sequences # 2  

consensusID : consensus_2083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 660
fasta sequence
                              [CCCGAGTGACGTAGTGTTTTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAGTACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTCGGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTCAAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGCCTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGTGACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCATCTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC]

[+] EMBL CA332404             [CCCGAGTGACGTAGTGTTTTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAGTACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTTCTTCTTCGGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCC                                                                                                                                                                                                                                      ]
[+] EMBL FR0062936            [                                                                                                                                                                                                                                                                                                                                              TCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTCGGTGTCCGAATTGAACAGTTGTGCTAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTCAAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGCCTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGTGACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCATCTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC]


>consensus_2083#0 CCCGAGTGACGTAGTGTTTTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAG GCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGC AACATTTTTATTTCGTAGTACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGG TAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATAT AACAACGTTGTTCAAATGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGT AAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCC CTCGAATTCTGGTTCTTCGGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACAT GGCCGGCTCCGTCTCGTCAAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCAT TTCAGTGACAATCCCTGCCTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTAC GATCCACTGGCAGATAGTGACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGT GTGTTCGCCGTTGGTCATCTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC



consensusID : consensus_2083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 447
fasta sequence
                              [AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCCCAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA]

[+] EMBL CA332150             [AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCCCAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTTTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA]
[+] EMBL CA332631             [                                                                            CTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAATTATTGTTAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTC  ]


>consensus_2083#1 AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCC CAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTT TTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTAT CACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAG TACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAAG TAGTGCAAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGT ATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGCAAAGATCACTTTATCAG TTCATTCCTCATACAGGAATCCCTCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2083#0      ------------------------------------------------------------
consensus_2083#1      AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCC 60
                                                                                  

consensus_2083#0      ------------------------------------------CCCGAGTGACGTAGTGTT 18
consensus_2083#1      CAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTT 120
                                                                ******************

consensus_2083#0      TTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTAT 78
consensus_2083#1      TTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTAT 180
                      ********* * ************************************************

consensus_2083#0      CACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAG 138
consensus_2083#1      CACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAG 240
                      *****************************************************  *****

consensus_2083#0      TACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAG 198
consensus_2083#1      TACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAAG 300
                      ******************* ******************* ** *****************

consensus_2083#0      TAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATG 258
consensus_2083#1      TAGTGCAAAGCGATAGCAATA--------------------TAACAACGTTGTTCAAACG 340
                      *********************                    ***************** *

consensus_2083#0      GTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACA 318
consensus_2083#1      GTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACA 400
                      ************************************************************

consensus_2083#0      CGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTC 378
consensus_2083#1      CGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA------------- 447
                      ** ***************************** **************             

consensus_2083#0      GGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTC 438
consensus_2083#1      ------------------------------------------------------------
                                                                                  

consensus_2083#0      AAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGC 498
consensus_2083#1      ------------------------------------------------------------
                                                                                  

consensus_2083#0      CTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGT 558
consensus_2083#1      ------------------------------------------------------------
                                                                                  

consensus_2083#0      GACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCAT 618
consensus_2083#1      ------------------------------------------------------------
                                                                                  

consensus_2083#0      CTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC 660
consensus_2083#1      ------------------------------------------
                                                                




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)