These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [CCCGAGTGACGTAGTGTTTTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAGTACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTCGGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTCAAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGCCTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGTGACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCATCTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC] [+] EMBL CA332404 [CCCGAGTGACGTAGTGTTTTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAGTACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTTCTTCTTCGGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCC ] [+] EMBL FR0062936 [ TCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTCGGTGTCCGAATTGAACAGTTGTGCTAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTCAAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGCCTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGTGACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCATCTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC] consensusID : consensus_2083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence [AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCCCAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA] [+] EMBL CA332150 [AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCCCAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTTTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA] [+] EMBL CA332631 [ CTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAATTATTGTTAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2083#0 ------------------------------------------------------------ consensus_2083#1 AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCC 60 consensus_2083#0 ------------------------------------------CCCGAGTGACGTAGTGTT 18 consensus_2083#1 CAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTT 120 ****************** consensus_2083#0 TTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTAT 78 consensus_2083#1 TTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTAT 180 ********* * ************************************************ consensus_2083#0 CACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAG 138 consensus_2083#1 CACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAG 240 ***************************************************** ***** consensus_2083#0 TACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAG 198 consensus_2083#1 TACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAAG 300 ******************* ******************* ** ***************** consensus_2083#0 TAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATG 258 consensus_2083#1 TAGTGCAAAGCGATAGCAATA--------------------TAACAACGTTGTTCAAACG 340 ********************* ***************** * consensus_2083#0 GTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACA 318 consensus_2083#1 GTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACA 400 ************************************************************ consensus_2083#0 CGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTC 378 consensus_2083#1 CGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA------------- 447 ** ***************************** ************** consensus_2083#0 GGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTC 438 consensus_2083#1 ------------------------------------------------------------ consensus_2083#0 AAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGC 498 consensus_2083#1 ------------------------------------------------------------ consensus_2083#0 CTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGT 558 consensus_2083#1 ------------------------------------------------------------ consensus_2083#0 GACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCAT 618 consensus_2083#1 ------------------------------------------------------------ consensus_2083#0 CTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC 660 consensus_2083#1 ------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |