These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 751 fasta sequence [CTGAAGTTGAGATGGCTTAGCTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTATTAAGTTAACACTACTGGGGATCATTACAATTTACCATAATAACCGTCCGACCATGAAGNTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAGAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCGACTCCCAGGACTGCCAGCTGAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTTATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACAGCATTTTGCTGGATAGAATTGAGCAGGCATGTGATCCAACCCAGAAGGCAGATGTAGCAGCTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGCTTCGTGCAAAAGTGGAGGTCACCATCCCTCGCAAGAGAAGAGGAAGCTGCACTCAGCATGACTAGGCACTGGACCGCTTCTATGAGGCGGTGATGCAGGCGATTCTCCGTCACATCAAGTTTGATGTGATCAAGTGCATCCTGGTTGGCAGTCCGGGC] [+] EMBL BU807334 [CTGAAGTTGAGATGGCTTAGCTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCATGAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAGAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCGACTCCCAGGCCTGCCAGCTGAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTTATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACAGCATTTTGCTGGATAGAATTGAGCAGGCATGTGATCCAACCCAGAAGGCAGATGTAGCAGCTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGCTTCGTGCAAAAG ] [+] EMBL FR0060685 [ AACATGATCTATACTTATTAAGTTAACACTACTGGGGATCATTACAATTTACCATAATAACCGTCCGACCATGAAGNTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAGAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCG ] [+] EMBL CA846329 [ AAGACATTGAAAAAGATAATGCCGGGGAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCATAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCGACTCCCAGGACTGCCAGCTGAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTTATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACAGCATTTTGCTGGATAGAATTGATCAGGCATGTGATCCAACCCATAATGCAGATGTAGCAACTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGCTTCGTGCAATAGTGGAGGTCACCATCCCTCGCAAGAGAAGAGGAAGCTGCACTCAGCATGACTAGGCACTGGACCGCTTCTATGAGGCGGTGATGCAGGCGATTCTCCGTCACATCAAGTTTGATGTGATCAAGTGCATCCTGGTTGGCAGTCCGGGC] consensusID : consensus_2087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [CTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCATGAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGTGAGTGATTGGCCAGAGCTAAAATGCTAATGCTAACCAAAATGCTGGTACGAAGCTGACTGTGCAAATGTCAACATCATTGCAGTGAATGTCCGTATGTGTTATAAAGACCCTACATGCTTAAAACGTAATAGGACCAACTCATCTTTTGCAAGCGGTATTTTCTAGCAGAACTCTAAATGCAGGNGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCAC] [+] EMBL FR0061742 [CTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCATGAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGTGAGTGATTGGCCAGAGCTAAAATGCTAATGCTAACCAAAATGCTGGTACGAAGCTGACTGTGCAAATGTCAACATCATTGCAGTGAATGTCCGTATGTGTTATAAAGACCCTACATGCTTAAAACGTAATAGGACCAACTCATCTTTTGCAAGCGGTATTTTCTAGCAGAACTCTAAATGCAGGNGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2087#0 CTGAAGTTGAGATGGCTTAGCTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAA 60 consensus_2087#1 --------------------CTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAA 40 **************************************** consensus_2087#0 ACTTATTAAGTTAACACTACTGGGGATCATTACAATTTACCATAATAACCGTCCGACCAT 120 consensus_2087#1 ACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCAT 100 **** ***************** *********************************** consensus_2087#0 GAAGNTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGA 180 consensus_2087#1 GAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGTGAGTGATT----------- 149 **** *********************************** **** * consensus_2087#0 GGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAG-AG 239 consensus_2087#1 --GGCCAGAGCTAAAATGCTAATGCTA-ACCAAAATGCTGGTACGAAGCTGACTGTGCAA 206 * ***** * ** * **** * * *** *** * * * ** * * consensus_2087#0 CCTCCACAATCAGGAAAGTGCAAA-CCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGA 298 consensus_2087#1 ATGTCAACATCATTGCAGTGAATGTCCGTATGTGTTATAAAGACCCTACATGCTTAAAAC 266 ** **** **** * *** * * * * * * * consensus_2087#0 GT--CCGGACCACCTTGACCTTATGTGTGGAG-ACTGTTGACTTCGACTCCCAGGACTGC 355 consensus_2087#1 GTAATAGGACCAACTC-ATCTTTTGCAAGCGGTATTTTCTAGCAGAACTCTAAATGCAGG 325 ** ****** ** * *** ** * * * * * * **** * * * consensus_2087#0 CAGCT--GAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTT 413 consensus_2087#1 NGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCAC---------------------- 363 ** ** * * *** ** * * * ** consensus_2087#0 ATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACA 473 consensus_2087#1 ------------------------------------------------------------ consensus_2087#0 GCATTTTGCTGGATAGAATTGAGCAGGCATGTGATCCAACCCAGAAGGCAGATGTAGCAG 533 consensus_2087#1 ------------------------------------------------------------ consensus_2087#0 CTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGC 593 consensus_2087#1 ------------------------------------------------------------ consensus_2087#0 TTCGTGCAAAAGTGGAGGTCACCATCCCTCGCAAGAGAAGAGGAAGCTGCACTCAGCATG 653 consensus_2087#1 ------------------------------------------------------------ consensus_2087#0 ACTAGGCACTGGACCGCTTCTATGAGGCGGTGATGCAGGCGATTCTCCGTCACATCAAGT 713 consensus_2087#1 ------------------------------------------------------------ consensus_2087#0 TTGATGTGATCAAGTGCATCCTGGTTGGCAGTCCGGGC 751 consensus_2087#1 -------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |