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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 983 fasta sequence
[CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAAAAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACGCGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCTGCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTGGACACACTCAAGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACATTACTATTCCTGAACCATCCTGGAGGAAGGGAGTGGTTGACTTATCTGGAACAAAGTTCTTTGACTACATGGCTTCTGAAACACGAAACAAGCTCATGGGATGGGTTTCCAAAATGCCATCCTGGTGGAAGAGACTGTTTAACTTTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAAACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAGAAGCTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTTTAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATTAGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTATTCAAATAATAAAGAACTTCT]
[+] EMBL BU806142 [CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAAAAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACGCGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCTGCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTGGACACACTCAAGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACATTCCTATTCCTAAACCATCCTGGTGGATGAGAc ]
[-] EMBL CA332542 [ TGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCCAGAAAAGTCTCAACATTACTATTCCTGAACCATCCTTGACGAAGGCAGTGGTTGACTTATCTGGAACAAAGTTCTTTGACTACATGGCTTCTGAAACACGAAACAAGCTCATGGGATGGGTTTCCAAAATGCCATCCTGGTGGAAGAGACTGTTTAACTTTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAAACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAGAAGCTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTTTAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATTAGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTATTCAAATAATAAAGAACTTCT]
consensusID : consensus_2089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence
[TTCTTTGCCAGTCTAAGCTTTTTCATTATAACAGAGACAACAGAGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCTATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTGGACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAAGTCTCAACATTCCTGTTCCTGAACCATCCTGGAGGAAGGGAGCGGTTGACTGTGAGTATTATTTACACCTGGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGATCTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTTCTCATTGTTATTGTCAGTTCCACGGCTGGGTAAGGTCAGCTGGCCGGTGGTGTCGGGAAACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAGCTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG]
[+] EMBL CA589308 [TTCTTTGCCAGTCTAAGCTTTTTCATTATAACAGAGACAACAGAGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCTATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTGGACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCCTGAAAAGTCTCAACATTCCTATTCCTGAACCATCCTGGAGGATGAGACCGTTTAAC ]
[+] EMBL FR0055838 [ CTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCTGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAACTTTCAACATTCCTGTTCCTGAACCATCCTGGAGGAAGGCAGTGGTTGACTGTGAGTATTATTTACACCTGGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGATCTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTTCTCATTGTTATTGTCAGTTCCACGGCTGGGTAAGGTCAGCTGGCCGGTGGTGTCGGGAAACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAGCTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2089#0 CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAA 60
consensus_2089#1 ------------------------------------------------------------
consensus_2089#0 AAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACG 120
consensus_2089#1 --------------------------------TTCTTTGCCA-GTCTAAGCTTTTTCATT 27
* * *** ** * **
consensus_2089#0 CGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCT 180
consensus_2089#1 ATAACAG--AGACAACAG-AGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCT 84
*** * * * * *********** *********************** **
consensus_2089#0 GCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTG 240
consensus_2089#1 ATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTG 144
* ************************************************* ******
consensus_2089#0 GACACACTCA--AGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGT 298
consensus_2089#1 GACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGT 204
*** ** **************************** *******************
consensus_2089#0 CAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGC 358
consensus_2089#1 CAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGC 264
**************************** *******************************
consensus_2089#0 AGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAG 418
consensus_2089#1 AGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAG 324
************************************************************
consensus_2089#0 ATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAG 478
consensus_2089#1 ATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAG 384
**************************************************** ******
consensus_2089#0 GCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACAT 538
consensus_2089#1 GCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAAGTCTCAACAT 444
********************************** ******** ****************
consensus_2089#0 TACTATTCCTGAACCATCCTGGAGGAAGGGAGTGGTTGACT--------TATCTGGAACA 590
consensus_2089#1 TCCTGTTCCTGAACCATCCTGGAGGAAGGGAGCGGTTGACTGTGAGTATTATTTACACCT 504
* ** *************************** ******** *** * * *
consensus_2089#0 AAGTTCTT-TGACTACATGGCTTCTGAAA----CACGAAAC------------------- 626
consensus_2089#1 GGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGAT 564
* ** * ** * * ****** *** * *
consensus_2089#0 ------AAGCTCATGGGATGGGTTTCCAAAAT----GCCATCCTGGTGGAAGAGACTGTT 676
consensus_2089#1 CTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTT 624
** * ** ** * * * * ** * * * *** * ** * **
consensus_2089#0 -TAACT-----------TTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAA 724
consensus_2089#1 CTCATTGTTATTGTCAGTTCCACGGCTGGGTAA-GGTCAGCTGGCCGGTGGTGTCGGGAA 683
* * * **************** ****** ******************
consensus_2089#0 ACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAA--GAAG 782
consensus_2089#1 ACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAG 743
***** ****** **************************************** ****
consensus_2089#0 CTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTT 842
consensus_2089#1 CTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG-------- 795
************************ ******* *******************
consensus_2089#0 TAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATT 902
consensus_2089#1 ------------------------------------------------------------
consensus_2089#0 AGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTA 962
consensus_2089#1 ------------------------------------------------------------
consensus_2089#0 TTCAAATAATAAAGAACTTCT 983
consensus_2089#1 ---------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |