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Takifugu rubripes
cluster # 2089 cluster # 2089       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2089#0 length = 983 sequences # 2  
consensus_2089#1 length = 795 sequences # 2  

consensusID : consensus_2089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 983
fasta sequence
                              [CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAAAAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACGCGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCTGCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTGGACACACTCAAGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACATTACTATTCCTGAACCATCCTGGAGGAAGGGAGTGGTTGACTTATCTGGAACAAAGTTCTTTGACTACATGGCTTCTGAAACACGAAACAAGCTCATGGGATGGGTTTCCAAAATGCCATCCTGGTGGAAGAGACTGTTTAACTTTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAAACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAGAAGCTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTTTAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATTAGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTATTCAAATAATAAAGAACTTCT]

[+] EMBL BU806142             [CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAAAAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACGCGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCTGCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTGGACACACTCAAGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACATTCCTATTCCTAAACCATCCTGGTGGATGAGAc                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA332542             [                                                                                                                                                                                                                                                                                                                                                                                                               TGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCCAGAAAAGTCTCAACATTACTATTCCTGAACCATCCTTGACGAAGGCAGTGGTTGACTTATCTGGAACAAAGTTCTTTGACTACATGGCTTCTGAAACACGAAACAAGCTCATGGGATGGGTTTCCAAAATGCCATCCTGGTGGAAGAGACTGTTTAACTTTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAAACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAGAAGCTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTTTAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATTAGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTATTCAAATAATAAAGAACTTCT]


>consensus_2089#0 CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAA AAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACG CGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCT GCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTG GACACACTCAAGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGTCA AATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGCAG TAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGAT TACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAGGC TCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACATTA CTATTCCTGAACCATCCTGGAGGAAGGGAGTGGTTGACTTATCTGGAACAAAGTTCTTTG ACTACATGGCTTCTGAAACACGAAACAAGCTCATGGGATGGGTTTCCAAAATGCCATCCT GGTGGAAGAGACTGTTTAACTTTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCG GGAAACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAGA AGCTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACG TTTAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAA TTAGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGG TATTCAAATAATAAAGAACTTCT



consensusID : consensus_2089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 795
fasta sequence
                              [TTCTTTGCCAGTCTAAGCTTTTTCATTATAACAGAGACAACAGAGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCTATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTGGACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAAGTCTCAACATTCCTGTTCCTGAACCATCCTGGAGGAAGGGAGCGGTTGACTGTGAGTATTATTTACACCTGGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGATCTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTTCTCATTGTTATTGTCAGTTCCACGGCTGGGTAAGGTCAGCTGGCCGGTGGTGTCGGGAAACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAGCTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG]

[+] EMBL CA589308             [TTCTTTGCCAGTCTAAGCTTTTTCATTATAACAGAGACAACAGAGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCTATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTGGACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCCTGAAAAGTCTCAACATTCCTATTCCTGAACCATCCTGGAGGATGAGACCGTTTAAC                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL FR0055838            [                                                                                                                                                                                                                                                                                                                                              CTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCTGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAACTTTCAACATTCCTGTTCCTGAACCATCCTGGAGGAAGGCAGTGGTTGACTGTGAGTATTATTTACACCTGGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGATCTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTTCTCATTGTTATTGTCAGTTCCACGGCTGGGTAAGGTCAGCTGGCCGGTGGTGTCGGGAAACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAGCTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG]


>consensus_2089#1 TTCTTTGCCAGTCTAAGCTTTTTCATTATAACAGAGACAACAGAGACATGGAGAATCTTG TATCTGGAACAAAGTTCTTTGCCTATGTGGCTTCTGAAACAAAAAACGCTCACATGGAAT GGGTTTCCAAAATGAAACGTGTTGGACTACTTCTGTAGTGAACATTCAGGAAGATGCAGA TTATTATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACGAGGCCCT GGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCC TGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGT CGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAA TCAGATCAAGAAAAGTCTCAACATTCCTGTTCCTGAACCATCCTGGAGGAAGGGAGCGGT TGACTGTGAGTATTATTTACACCTGGATCCTCATACCTGAAATACCTCTGAAGGCGTCAC CATGCTGCTTTTCTTTATTCAGATCTGGTGAAACACAAGGAACTGATGCCAGGCATCGCT GTTGTTATTGTGTTGGTGATTCTTCTCATTGTTATTGTCAGTTCCACGGCTGGGTAAGGT CAGCTGGCCGGTGGTGTCGGGAAACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTA GAGACACCAGACCTCAAAGGAAGCTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATT TAGGATGTGTCCTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2089#0      CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAA 60
consensus_2089#1      ------------------------------------------------------------
                                                                                  

consensus_2089#0      AAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACG 120
consensus_2089#1      --------------------------------TTCTTTGCCA-GTCTAAGCTTTTTCATT 27
                                                             * * ***  **    * **  

consensus_2089#0      CGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCT 180
consensus_2089#1      ATAACAG--AGACAACAG-AGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCT 84
                        *** *  *  * *    ***********    *********************** **

consensus_2089#0      GCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTG 240
consensus_2089#1      ATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTG 144
                        * ************************************************* ******

consensus_2089#0      GACACACTCA--AGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGT 298
consensus_2089#1      GACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGT 204
                      ***    **   **************************** *******************

consensus_2089#0      CAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGC 358
consensus_2089#1      CAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGC 264
                      **************************** *******************************

consensus_2089#0      AGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAG 418
consensus_2089#1      AGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAG 324
                      ************************************************************

consensus_2089#0      ATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAG 478
consensus_2089#1      ATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAG 384
                      ****************************************************  ******

consensus_2089#0      GCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACAT 538
consensus_2089#1      GCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAAGTCTCAACAT 444
                      ********************************** ******** ****************

consensus_2089#0      TACTATTCCTGAACCATCCTGGAGGAAGGGAGTGGTTGACT--------TATCTGGAACA 590
consensus_2089#1      TCCTGTTCCTGAACCATCCTGGAGGAAGGGAGCGGTTGACTGTGAGTATTATTTACACCT 504
                      * ** *************************** ********        *** *  * * 

consensus_2089#0      AAGTTCTT-TGACTACATGGCTTCTGAAA----CACGAAAC------------------- 626
consensus_2089#1      GGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGAT 564
                         * **  *  **  *   * ******     *** *  *                   

consensus_2089#0      ------AAGCTCATGGGATGGGTTTCCAAAAT----GCCATCCTGGTGGAAGAGACTGTT 676
consensus_2089#1      CTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTT 624
                            ** * ** ** *  * *  *    **    *   *  * ***   * ** * **

consensus_2089#0      -TAACT-----------TTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAA 724
consensus_2089#1      CTCATTGTTATTGTCAGTTCCACGGCTGGGTAA-GGTCAGCTGGCCGGTGGTGTCGGGAA 683
                       * * *           **************** ******  ******************

consensus_2089#0      ACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAA--GAAG 782
consensus_2089#1      ACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAG 743
                      ***** ******  ****************************************  ****

consensus_2089#0      CTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTT 842
consensus_2089#1      CTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG-------- 795
                      ************************ ******* *******************        

consensus_2089#0      TAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATT 902
consensus_2089#1      ------------------------------------------------------------
                                                                                  

consensus_2089#0      AGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTA 962
consensus_2089#1      ------------------------------------------------------------
                                                                                  

consensus_2089#0      TTCAAATAATAAAGAACTTCT 983
consensus_2089#1      ---------------------
                                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)