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Takifugu rubripes
cluster # 210 cluster # 210       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_210#0 length = 536 sequences # 1  
consensus_210#1 length = 462 sequences # 1  

consensusID : consensus_210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence
                              [GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTGTTGTGCATCGTTTCTAAGGCAACGCGGAGGACCAAGCGGGCGTCTGCGACTGGATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCATGTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTCCCGATGATTCGCCGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCCCCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAACGCCGAAACCGGGGACAGATTAACACGCACGACGAGCAACTTGAAAACTTTACAGTGCAGCGCGTACAAATAAAGTTGTACAAGGTCTCAAATCTGCATATTTTGAAGGAATAGACATTTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCTATGCTAGGCTAACGCTAGG]

[+] EMBL CA329815             [GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTGTTGTGCATCGTTTCTAAGGCAACGCGGAGGACCAAGCGGGCGTCTGCGACTGGATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCATGTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTCCCGATGATTCGCCGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCCCCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAACGCCGAAACCGGGGACAGATTAACACGCACGACGAGCAACTTGAAAACTTTACAGTGCAGCGCGTACAAATAAAGTTGTACAAGGTCTCAAATCTGCATATTTTGAAGGAATAGACATTTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCTATGCTAGGCTAACGCTAGG]


>consensus_210#0 GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTG TTGTGCATCGTTTCTAAGGCAACGCGGAGGACCAAGCGGGCGTCTGCGACTGGATCCGGA GGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCATGTTACAG GACTCAGACACTCACACACGCTACAACGGTGACCGTTTCCCGATGATTCGCCGCAGTCGC TCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCCCCCGTTTTA GCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAACGCCGAAACCGGGGACAGATT AACACGCACGACGAGCAACTTGAAAACTTTACAGTGCAGCGCGTACAAATAAAGTTGTAC AAGGTCTCAAATCTGCATATTTTGAAGGAATAGACATTTTGGCTAATATGCATAACTGGT CGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCTATGCTAGGCTAACGCTAGG



consensusID : consensus_210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence
                              [AGGAATAGATTGACATTTTGGGAAATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCTGGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTGCTGTCAATGGTTAACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCCACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATCCCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCCTGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGTAGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCATATTAGCCAAAATGTCTATTCC]

[+] EMBL FR0055273            [AGGAATAGATTGACATTTTGGGAAATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCTGGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTGCTGTCAATGGTTAACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCCACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATCCCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCCTGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGTAGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCATATTAGCCAAAATGTCTATTCC]


>consensus_210#1 AGGAATAGATTGACATTTTGGGAAATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGC CAAATAAATATGTAAGGCGGCTCTGGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACA CACCAGCATATTTAAGGTTCGTTGCTGTCAATGGTTAACTGGACTGCTCAGTAAATTTGA CCCGTTTGGCTGGTGTTGCCCACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCAC CTAAACTGCACTGTTGAGATCCCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTT ACACCTTGACCCTTATGGCCCTGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCC AAAGCCAAACCTCCTAGCGGTAGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTC ACAGTACGAGCAGTTATGCATATTAGCCAAAATGTCTATTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_210#0      GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTG 60
consensus_210#1      ----------------------------------AGGAATAGATTGACATTT--TGGGAA 24
                                                         *    *    *****   * *   

consensus_210#0      TTGTGCATCGTTTCTAAGGC---AACGCGGAGGA-CCAAGCGGGCGTCT---GCGACTGG 113
consensus_210#1      ATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCT 84
                      ***** *  ** ** **      *** * ** * ****       * *   *** **  

consensus_210#0      ATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCAT 173
consensus_210#1      GGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTG 144
                        *****    * **  **      *    *    ** * ** *  **** *   *   

consensus_210#0      GTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTC--CCGATGATTCGC 231
consensus_210#1      CTGTCAATGGTTA---ACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCC 201
                      *  **    * *   ***      * *   **   *****  **   * * ** * * *

consensus_210#0      CGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCC 291
consensus_210#1      ACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATC 261
                          *  ***  * ** *   *  ** *  * *** *   *       *         *

consensus_210#0      CCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAAC-------GCCG 344
consensus_210#1      CCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCC 321
                     **       **  *  * *  *   *    ** ** ******     **       *** 

consensus_210#0      AAACCGGGGACAGATTAACACGCACG-ACGAGCAACTTGAAAACTTTACAGTGCAGCGCG 403
consensus_210#1      TGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGT 381
                       *  ** *****  *      * *  * ** *  **  *** *   **     ****  

consensus_210#0      TACAAATAAAGTTGTACAAGGTCTC---AAATCTG---CATATTTTGAAGGAATAGACAT 457
consensus_210#1      AGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCAT 441
                       *  *  *    *****   ****   * ****    ** * *  **     **  ***

consensus_210#0      TTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCT 517
consensus_210#1      ATTAGCCAAAATGTCTATTCC--------------------------------------- 462
                      ** ** ** ***  **                                           

consensus_210#0      ATGCTAGGCTAACGCTAGG 536
consensus_210#1      -------------------
                                        




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)