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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTGTTGTGCATCGTTTCTAAGGCAACGCGGAGGACCAAGCGGGCGTCTGCGACTGGATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCATGTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTCCCGATGATTCGCCGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCCCCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAACGCCGAAACCGGGGACAGATTAACACGCACGACGAGCAACTTGAAAACTTTACAGTGCAGCGCGTACAAATAAAGTTGTACAAGGTCTCAAATCTGCATATTTTGAAGGAATAGACATTTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCTATGCTAGGCTAACGCTAGG]
[+] EMBL CA329815 [GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTGTTGTGCATCGTTTCTAAGGCAACGCGGAGGACCAAGCGGGCGTCTGCGACTGGATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCATGTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTCCCGATGATTCGCCGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCCCCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAACGCCGAAACCGGGGACAGATTAACACGCACGACGAGCAACTTGAAAACTTTACAGTGCAGCGCGTACAAATAAAGTTGTACAAGGTCTCAAATCTGCATATTTTGAAGGAATAGACATTTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCTATGCTAGGCTAACGCTAGG]
consensusID : consensus_210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[AGGAATAGATTGACATTTTGGGAAATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCTGGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTGCTGTCAATGGTTAACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCCACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATCCCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCCTGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGTAGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCATATTAGCCAAAATGTCTATTCC]
[+] EMBL FR0055273 [AGGAATAGATTGACATTTTGGGAAATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCTGGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTGCTGTCAATGGTTAACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCCACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATCCCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCCTGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGTAGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCATATTAGCCAAAATGTCTATTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_210#0 GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTG 60
consensus_210#1 ----------------------------------AGGAATAGATTGACATTT--TGGGAA 24
* * ***** * *
consensus_210#0 TTGTGCATCGTTTCTAAGGC---AACGCGGAGGA-CCAAGCGGGCGTCT---GCGACTGG 113
consensus_210#1 ATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCT 84
***** * ** ** ** *** * ** * **** * * *** **
consensus_210#0 ATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCAT 173
consensus_210#1 GGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTG 144
***** * ** ** * * ** * ** * **** * *
consensus_210#0 GTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTC--CCGATGATTCGC 231
consensus_210#1 CTGTCAATGGTTA---ACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCC 201
* ** * * *** * * ** ***** ** * * ** * * *
consensus_210#0 CGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCC 291
consensus_210#1 ACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATC 261
* *** * ** * * ** * * *** * * * *
consensus_210#0 CCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAAC-------GCCG 344
consensus_210#1 CCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCC 321
** ** * * * * * ** ** ****** ** ***
consensus_210#0 AAACCGGGGACAGATTAACACGCACG-ACGAGCAACTTGAAAACTTTACAGTGCAGCGCG 403
consensus_210#1 TGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGT 381
* ** ***** * * * * ** * ** *** * ** ****
consensus_210#0 TACAAATAAAGTTGTACAAGGTCTC---AAATCTG---CATATTTTGAAGGAATAGACAT 457
consensus_210#1 AGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCAT 441
* * * ***** **** * **** ** * * ** ** ***
consensus_210#0 TTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCT 517
consensus_210#1 ATTAGCCAAAATGTCTATTCC--------------------------------------- 462
** ** ** *** **
consensus_210#0 ATGCTAGGCTAACGCTAGG 536
consensus_210#1 -------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |