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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 539 fasta sequence
[TCGGTGTCTTTATTTGCTGAAAATACACGATACAGGTGTCAAAATGCAACACAAACACAACACAAATCAACACCGCACATCCGCGACGTCCGATTAAAATGTGATTTTTAAACAAAACCAAAGTTTTACAAGCAGAAGTTGCATTAACTTTCAAATGGACATTTAATCAGGTCATCTGATATTGCAGATGGTATTTGAGGAATCCTGATTTTCTATTTAGGAAATAAAATGTCTCAGCATTTGTTTAAAAAACCAACANTGATATGTTCTGATTCTGAGAAATAATGGCACAATTTTGACTTCTTACATGTGAGAAACACTAAAATACAAAAGTCTGAAGGTAGAATAATTTCTGAAAGACAACATTCAAATCTGAGCAAAGC-TTTTTTTTTTCCCAAACTCCTGAGGTTTACATTCAACGACTACCTTTATTGAAAAAAAATGTACAAAGTTCATTGCTACACTATATAAAAAGGATATCTGCATAAAAGAGGACGCGCTATTTACAAAAAAAACACACTCTTGCTTGGCGGTGCGTG]
[+] EMBL CA332164 [TCGGTGTCTTTATTTGCTGAAAATACACGATACAGGTGTCAAAATGCAACACAAACACAACACAAATCAACACCGCACATCCGCGACGTCCGATTAAAATGTGATTTTTAAACAAAACCAAAGTTTTACAAGCAGAAGTTGCATTAACTTTCAAATGGACATTTAATCAGGTCATCTGATATTGCAGATGGTATTTGAGGAATCTTGATTTTCTATTTAGGAAATAAAATGTCTCAGCATTTGTTTAAAAAACCAACATTGATATGTTCTGATTCTGAGAAATAATGGCACAATTTTGACTTCTTACATGTGAGAAACACTAAAATACAAAAGTCTGAAGGTAGAATAATTTCTGAAAGACAACATTCAAATCTGAGCAAAGCTTTTTTTTTTTCCCAAACTCCTGAGGTTTACATTCAACGACTACCTTTATTGAAAAAAAATGTACAAAGTTCATTGCTACACTATATAAAAAGGATATCTGCATAAAAGAGGACGCGCTATTTACAAAAAAAACACACTCTTGCTTGGCGGTGCGTG]
[-] EMBL FR0058069 [ ATTTGAGGAATCCTGATTTTCTATTTAGGAAATAAAATGTCTCAGCATTTGTTTAAAAAACCAACANTGATATGTTCTGATTCTGAGAAATAATGGCACAATTTTGACTTCTTACATGTGAGAAACACTAAAATACAAAAGTCTGAAGGTAGAATAATTTCTGAAAGACAACATTCAAATCTGAGCAAAGC TTTTTTTTTTCCCAAACTCCTGAGGTTTACATTCAACGACTACCTTTATTGAAAAAAAA ]
[-] EMBL FR0058232 [ ATTTGAGGAATCCTGATTTTCTATTTAGGAAATAAAATGTCTCAGCATTTGTTTAAAAAACCAACANTGATATGTTCTGATTCTGAGAAATAATGGCACAATTTTGACTTCTTACATGTGAGAAACACTAAAATACAAAAGTCTGAAGGTAGAATAATTTCTGAAAGACAACATTCAAATCTGAGCAAAGC TTTTTTTTTTCCCAAACTCCTGAGGTTTACATTCAACGACTACCTTTATTGAAAAAAAA ]
consensusID : consensus_2102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[CATGACAACAGCTCTGGGAAGGTTAAAGCAGCCAAAGCTGCGTCAACGGTTCTGTGCAACATGTTCCAGTACAAGAAGCTGCACAAAACATATAAAACGAAAGGGTTCATGAGACGGGATTTTGAAGACATGGTTTAAGTCAAAGATCATGGGAAATCTCATCTCACCAGTGCTGCACACTTCCCCCCATTCGCCCCTCCTGGAGCAGATTCTCTTACCTGAGCAGGAGTTGGAAGGGTTATTAAACGTTTGCTTCGAGTTTTGCATCAACACAGACACACAAAGTGTGTGTGCGTGTGTGTGCGCGCGCATGTTTATTGTTTCCCTCAGATTTGCACAGTTGAACAAAACGTGGCTCCGGATCATGGACTGTTGATGGCTGGATGATCTGTAACTCTGAGTTTGAACTCTCTTCATTTGGATTCTGGGATTTCTTCTGTCAGATGGCAACGTGCACGCACCGCCAAGCAAGAGTGTGTTTTTTTTGGTAATAGCGCGTCCTCTTTT]
[+] EMBL FR0057184 [CATGACAACAGCTCTGGGAAGGTTAAAGCAGCCAAAGCTGCGTCAACGGTTCTGTGCAACATGTTCCAGTACAAGAAGCTGCACAAAACATATAAAACGAAAGGGTTCATGAGACGGGATTTTGAAGACATGGTTTAAGTCAAAGATCATGGGAAATCTCATCTCACCAGTGCTGCACACTTCCCCCCATTCGCCCCTCCTGGAGCAGATTCTCTTACCTGAGCAGGAGTTGGAAGGGTTATTAAACGTTTGCTTCGAGTTTTGCATCAACACAGACACACAAAGTGTGTGTGCGTGTGTGTGCGCGCGCATGTTTATTGTTTCCCTCAGATTTGCACAGTTGAACAAAACGTGGCTCCGGATCATGGACTGTTGATGGCTGGATGATCTGTAACTCTGAGTTTGAACTCTCTTCATTTGGATTCTGGGATTTCTTCTGTCAGATGGCAACGTGCACGCACCGCCAAGCAAGAGTGTGTTTTTTTTGGTAATAGCGCGTCCTCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2102#0 TCGGTGTCTTTATTTGCTGAAAATACACGATA-CAGGTGTCAAAATGCAACACAAACACA 59
consensus_2102#1 -------------------------CATGACAACAGCTCTGGGAAGGTTAAAGCAGCCAA 35
** ** * *** * * ** * * * * * *
consensus_2102#0 ACACAAATCAACACCGCACATCCGCGACGTCCGATTAAAATGTGATTTTTAAA-----CA 114
consensus_2102#1 AGCTGCGTCAACGGTTC-TGTGCAACATGTTCCAGTACAAGAAGCTGCACAAAACATATA 94
* ***** * * * * ** * * ** ** * * *** *
consensus_2102#0 AAACCAAAGT-TTTACAAGCAGAAGTTGCATTAACTT---TCAAATGGACATTTAATCAG 170
consensus_2102#1 AAACGAAAGGGTTCATGAGACGGGATTTTGAAGACATGGTTTAAGTCAAAGATCA--TGG 152
**** **** ** * ** * ** ** * * ** * * * * *
consensus_2102#0 GTCATCTGATATTGCAGATGGTATTTGAGGAATCCTGATTTTCTATTTAGGAAATAAAAT 230
consensus_2102#1 GAAATCTCATCTCACCAGTGCTGCAC-ACTTCCCCCCATTCGCCCCTCCTGGAGCAGATT 211
* **** ** * * ** * * ** *** * * * * * * *
consensus_2102#0 GTCTCA-----GCATTTGTTTAAAAAACCAACANTGATATGTTCTGATTCTGAGA--AAT 283
consensus_2102#1 CTCTTACCTGAGCAGGAGTTGGAAGGGTTATTAAACGTTTGCTTCGAGTTTTGCATCAAC 271
*** * *** *** ** * * * ** * ** * * * **
consensus_2102#0 AATGGCACA---ATTTTGACTTCTTACATGTGAGAAACACTAAAATACAAAAGTCTGAAG 340
consensus_2102#1 ACAGACACACAAAGTGTGTGTGCGTGTGTGTGCGCG-CGCATGTTTATTGTTTCCCTCAG 330
* * **** * * ** * * * **** * * * ** * **
consensus_2102#0 GTAGAATAATTTCTGAAAGACAACATTCAAATCTGAGCAAAGCTTTTTTTTTTCCCAAAC 400
consensus_2102#1 ATTTGCACAGTTGAACAAAACGTGGCTC----CGGATCATGGACTGTTGATGGCTGGATG 386
* * ** ** ** ** * ** ** * * ** * * *
consensus_2102#0 TCCTG-AGGTTTACATTCAACGACTACCTTTATTGAAAAAAAATGTACAAAGTTCATTGC 459
consensus_2102#1 ATCTGTAACTCTGAGTTTGA--ACTCTCTTCATTTGGA----TTCTGGGATTTCTTCTGT 440
*** * * * ** * *** *** *** * * * * * **
consensus_2102#0 TACACTATATAAAAAGGATATCTGCATAAAAGAGGACGCGCTATTTACAAAAAAAACACA 519
consensus_2102#1 CAGATGGCAACGTGCACGCACCGCCAAGCAAGAG--TGTGTTTTTTTTGGTAATAGCGCG 498
* * * * * ** ***** * * * *** ** * * *
consensus_2102#0 CTCTTGCTTGGCGGTGCGTG 539
consensus_2102#1 TCCTCTTTT----------- 507
** **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |