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Takifugu rubripes
cluster # 2103 cluster # 2103       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2103#0 length = 701 sequences # 3  
 consensus_2103#1 length = 167 sequences # 1  
consensusID : consensus_2103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 701
fasta sequence 
                              [CATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACCCTATTCTGGGCTCCGGATGGGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTCATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTACCCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCTTGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAACAGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGCCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCTGTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATCAAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCGATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACACTAGCATTCATTATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAATATAAAAAAAACTCCGGGGGGGGGCCGGTTCCCAAGTTTTTG]

[+] EMBL CA844928             [CATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACCCTATTCTGGGCTCCGGATGGGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTCATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTACCCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCTTGTTGTAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAACAGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGCCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCTGTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATCAAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCGATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACACTAGCATTCATTATCTGACATCTT                                                                                        ]
[+] EMBL FR0056268            [                GCTATCTCTAGCTTGGCAGTCTACTCTATTCTGGGCTCCGGATGGGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTCATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTACCCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCTTGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAACAGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGGCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTC                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL FR0057830            [                                                                                                                                                                                                                                                                                                                                                 GAATATGCAAGAGGCCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCTGTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATCAAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCGATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACATTAGCATTCATTATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAATATAAAAAAAACTCCGGGGGGGGGCCGGTTCCCAAGTTTTTG]




>consensus_2103#0
CATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACCCTATTCTGGGCTCCGGATG
GGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTC
ATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTAC
CCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCT
TGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAAC
AGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGCCCCTTCGC
CCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCT
GTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATC
AAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCG
ATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACACTAGCATTCAT
TATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAT
ATAAAAAAAACTCCGGGGGGGGGCCGGTTCCCAAGTTTTTG

consensusID : consensus_2103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence 
                              [TGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGGGGAAAAAAAATTTTTTCC]

[+] EMBL FR0056607            [TGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGGGGAAAAAAAATTTTTTCC]




>consensus_2103#1
TGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACCGGGGGGGGGGGGGGAAAAAAAATTTTTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2103#0      CATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACCCTATTCTGGGCTCCGGATG 60
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      GGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTC 120
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      ATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTAC 180
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      CCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCT 240
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      TGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAAC 300
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      AGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGCCCCTTCGC 360
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      CCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCT 420
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      GTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATC 480
consensus_2103#1      ------------------------------------------------------------
                                                                                  

consensus_2103#0      AAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCG 540
consensus_2103#1      ------------------------------------TGACATCTTGCACTCCCAACTACA 24
                                                                **   ** * * * * * 

consensus_2103#0      ATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACACTAGCATTCAT 600
consensus_2103#1      ATAG---CAGGCCTTCCCCCTCAAATATAAAAA------AAAAAAAAAAAAAAAAAAAAA 75
                      ***    ***    * * ***** **  *****      *  *   * *  *  *   * 

consensus_2103#0      TATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAT 660
consensus_2103#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----------AAAAAAAAAAAAA 124
                       *    * *      *     **  * ** *  *             *** * ****** 

consensus_2103#0      ATAAAAAAAACTCCGGGGGGGGGCCGGTTCCCAAGTTTTTG-- 701
consensus_2103#1      AAAAAAAAAAACCGGGGGGGGGGGGGGAAAAAAAATTTTTTCC 167
                      * ********  * *********  **     ** *****


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)