These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 701 fasta sequence [CATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACCCTATTCTGGGCTCCGGATGGGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTCATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTACCCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCTTGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAACAGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGCCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCTGTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATCAAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCGATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACACTAGCATTCATTATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAATATAAAAAAAACTCCGGGGGGGGGCCGGTTCCCAAGTTTTTG] [+] EMBL CA844928 [CATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACCCTATTCTGGGCTCCGGATGGGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTCATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTACCCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCTTGTTGTAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAACAGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGCCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCTGTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATCAAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCGATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACACTAGCATTCATTATCTGACATCTT ] [+] EMBL FR0056268 [ GCTATCTCTAGCTTGGCAGTCTACTCTATTCTGGGCTCCGGATGGGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTCATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTACCCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCTTGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAACAGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGGCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTC ] [+] EMBL FR0057830 [ GAATATGCAAGAGGCCCCTTCGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCTGTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATCAAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCGATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACATTAGCATTCATTATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAATATAAAAAAAACTCCGGGGGGGGGCCGGTTCCCAAGTTTTTG] consensusID : consensus_2103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [TGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGGGGAAAAAAAATTTTTTCC] [+] EMBL FR0056607 [TGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGGGGAAAAAAAATTTTTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2103#0 CATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACCCTATTCTGGGCTCCGGATG 60 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 GGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTC 120 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 ATACGAAGTAAGTCTAGGGCTAATCCTTTTATCATTGATTATTTTTACAGGCAACTTTAC 180 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 CCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCT 240 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 TGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAAC 300 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 AGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGCCCCTTCGC 360 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 CCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCT 420 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 GTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATATC 480 consensus_2103#1 ------------------------------------------------------------ consensus_2103#0 AAAAACAGCCATTTTATCCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCG 540 consensus_2103#1 ------------------------------------TGACATCTTGCACTCCCAACTACA 24 ** ** * * * * * consensus_2103#0 ATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACACTAGCATTCAT 600 consensus_2103#1 ATAG---CAGGCCTTCCCCCTCAAATATAAAAA------AAAAAAAAAAAAAAAAAAAAA 75 *** *** * * ***** ** ***** * * * * * * * consensus_2103#0 TATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAAAT 660 consensus_2103#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----------AAAAAAAAAAAAA 124 * * * * ** * ** * * *** * ****** consensus_2103#0 ATAAAAAAAACTCCGGGGGGGGGCCGGTTCCCAAGTTTTTG-- 701 consensus_2103#1 AAAAAAAAAAACCGGGGGGGGGGGGGGAAAAAAAATTTTTTCC 167 * ******** * ********* ** ** ***** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |