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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[GACGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGGTGAGTGTCTCTGTGACGTGTGAAGCCGATCGTTGCTTGTGTTCCTATTTTCATTATCTATTTCCTTATTGTACGCCCAAGCTGGAGGACGGAAGCATAAAATGCGCTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATATAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTACCGCTTCAAACCTCCACTGGAGGCGACGCAGAGCAGCACACCTCTGGAGGACTTCAGTTCCACCTATTTTCCCCCGAACTCTGACATTCCAACGCCAGA]
[+] EMBL CA846220 [GACGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGGTGAGTGTCTCTGTGACGTGTGAAGCCGATCGTTGCTTGTGTTCCTATTTTCATTATCTATTTCCTTATTGTACGCCCAAGCTGGAGGACGGAAGCATAAAATGCGCTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATATAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTACCGCTTCAAACCTCCACTGGAGGCGACGCAGAGCAGCACACCTCTGGAGGACTTCAGTTCCACCTATTTTCCCCCGAACTCTGACATTCCAACGCCAGA]
consensusID : consensus_2111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 576 fasta sequence
[ATGACAGAGGAGCAGGTGTGGGAGGTCACCAGAGAGTCTCTGGAAGAGGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGCTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTA]
[+] EMBL BU806930 [ATGACAGAGGAGCAGGTGTGGGAGGTCACCAGAGAGTCTCTGGAAGAGGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGCTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATC ]
[+] EMBL CA589299 [ GAGGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGCTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGTTTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCT ]
[+] EMBL BU807803 [ AGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGAGAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2111#0 GACGCTGAATGAGACAGAAGAGACGGGCTGCGTC-TGAGGTGAGTGTCTCTGTGACGTGT 59
consensus_2111#1 ----------ATGACAGAGGAGCAGGTGTGGGAGGTCACCAGAGAGTCTCTGGAA----- 45
****** *** ** ** * * * *** ******* *
consensus_2111#0 GAAGCCGATCGTTGCTTGTGTTCCTATTTTCATTATCTATTTCCTTATTGTACGCCCAAG 119
consensus_2111#1 GAGGCTGAATGAGACAGAAGAGACGGGCT----------------------GCGTCTGAG 83
** ** ** * * * * * ** * **
consensus_2111#0 CTGGAGGACGGAAGCATAAAATGCGCTAGTGACTGAACTTCGGAACCCCGAACGGTCCAT 179
consensus_2111#1 CTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCAT 143
************************* **********************************
consensus_2111#0 TATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGA 239
consensus_2111#1 TATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGA 203
************************************************************
consensus_2111#0 TGCTGCAGCATGGAAATACAGGCAAATATAGCAGGACGAATGACAGGAATTAAGGATTTA 299
consensus_2111#1 TGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTA 263
*************************** ********************************
consensus_2111#0 AAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGA 359
consensus_2111#1 AAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGA 323
************************************************************
consensus_2111#0 CCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGG 419
consensus_2111#1 CCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGG 383
************************************************************
consensus_2111#0 ATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGA 479
consensus_2111#1 ATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGA 443
************************************************************
consensus_2111#0 AGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCA 539
consensus_2111#1 AGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCA 503
************************************************************
consensus_2111#0 TCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCT 599
consensus_2111#1 TCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCT 563
************************************************************
consensus_2111#0 GGGCTCAGGACTACCGCTTCAAACCTCCACTGGAGGCGACGCAGAGCAGCACACCTCTGG 659
consensus_2111#1 GGGCTCAGGACTA----------------------------------------------- 576
*************
consensus_2111#0 AGGACTTCAGTTCCACCTATTTTCCCCCGAACTCTGACATTCCAACGCCAGA 711
consensus_2111#1 ----------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |