|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGGCCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGAGCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCAGAGATGGTCCTGG]
[+] EMBL BU804656 [GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTTTTTGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAG ]
[+] EMBL CA591117 [ ACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGGCCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGAGCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCAGAGATGGTCCTGG]
consensusID : consensus_2115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence
[TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGGGAGATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG]
[+] EMBL BU806404 [TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG]
[+] EMBL FR0062987 [ ATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGTGAGATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGTTTATAAAGCGCTTGGGCCTGAATTCGAGGAGAAGCTGACCCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2115#0 GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGC 60
consensus_2115#1 -------TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGC 53
*****************************************************
consensus_2115#0 AGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGC 120
consensus_2115#1 AGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGC 113
********************************* ** * ************* ******
consensus_2115#0 CTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAG 180
consensus_2115#1 CTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGGGAG 173
********************************* **************** *********
consensus_2115#0 TTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGAT 240
consensus_2115#1 ATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGAT 233
******* ***************************************************
consensus_2115#0 CTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGA 300
consensus_2115#1 CTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGA 293
************************************************************
consensus_2115#0 CCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTC 360
consensus_2115#1 CCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTC 353
************************************************************
consensus_2115#0 TGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAA 420
consensus_2115#1 TGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAA 413
************************************************************
consensus_2115#0 CAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTA 480
consensus_2115#1 CAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTA 473
************************************************************
consensus_2115#0 AGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAA 540
consensus_2115#1 AGAAAG------------------------------------------------------ 479
******
consensus_2115#0 GAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGC 600
consensus_2115#1 ---------------CGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGC 524
*********************************************
consensus_2115#0 GTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGG 660
consensus_2115#1 GTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG 584
****************************** *****************************
consensus_2115#0 CCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGA 720
consensus_2115#1 ------------------------------------------------------------
consensus_2115#0 GCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCA 780
consensus_2115#1 ------------------------------------------------------------
consensus_2115#0 GAGATGGTCCTGG 793
consensus_2115#1 -------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |