|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 950 fasta sequence
[ACGCTGAGAAGCGGTCTGGTCAGCCGGTGCCGCTCGGCTAACATGGGCCTTAAAATTGGGAATTAAGACCTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCTGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCCGAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGACCAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTGGCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCCCAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGATCCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCACCCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT]
[+] EMBL BU805496 [ACGCTGAGAAGCGGTCTGGTCAGCCGGTGCCGCTCGGCTAATATGGGCCTTAAAATTGGGAATTAAGACCTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGC GGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGGGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGA ]
[+] EMBL CA589127 [ TACCATGGGCCTTAAAATTGGGAATTAAGACTTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCTTTTTGTCATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTACGGGAAGTGC ]
[+] EMBL BU807550 [ AGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCCGAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGACCAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTGGCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCCCAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGATCCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCACCCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT]
consensusID : consensus_2116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATTGACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAAGAGTTCCACGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG]
[+] EMBL CA332746 [TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATTGACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAAGAGTTCCACGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2116#0 ACGCTGA-GAAGCGGTCTGGTCAGCCGGTGCCGCTC-GGCTAACATGGGCCTTAAAATTG 58
consensus_2116#1 -TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATT- 58
* * ** * * * * ** * ** ** * *** * * * ***
consensus_2116#0 GGAATTAAGACCT-CAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTA 117
consensus_2116#1 -GACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAA----GAGTTCCA 113
** * ** *** * ******** ** ** * * * * * * *** ** *
consensus_2116#0 CACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGA 177
consensus_2116#1 CGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGA 173
* * * **** ** ****************************************
consensus_2116#0 GGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGT 237
consensus_2116#1 GGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGT 233
************************************************************
consensus_2116#0 CGGCTGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAG 297
consensus_2116#1 CGGC-GGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAG 292
**** *******************************************************
consensus_2116#0 AACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATC 357
consensus_2116#1 AACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATC 352
************************************************************
consensus_2116#0 CTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTG 417
consensus_2116#1 CTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTG 412
************************************************************
consensus_2116#0 TCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTT 477
consensus_2116#1 TCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTT 472
********************************** *************************
consensus_2116#0 AAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGC 537
consensus_2116#1 AAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGC 532
************************************************************
consensus_2116#0 TTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCC 597
consensus_2116#1 TTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG----------------------- 569
*************************************
consensus_2116#0 GAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGAC 657
consensus_2116#1 ------------------------------------------------------------
consensus_2116#0 CAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTG 717
consensus_2116#1 ------------------------------------------------------------
consensus_2116#0 GCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCC 777
consensus_2116#1 ------------------------------------------------------------
consensus_2116#0 CAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGAT 837
consensus_2116#1 ------------------------------------------------------------
consensus_2116#0 CCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCAC 897
consensus_2116#1 ------------------------------------------------------------
consensus_2116#0 CCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT 950
consensus_2116#1 -----------------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |