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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence
[TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAGATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAGAAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGAGGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCAGGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAGGGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCAGCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTTTAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA]
[+] EMBL CA847152 [TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAGATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAGAAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGAGGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCAGGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAGGGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCAGCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGGCTGGAGGACAGGCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACGCTAGCCGCGCCAACCCTCAATCGATGNGTGCAGCACCACAA ]
[+] EMBL CA589331 [ TGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGT ]
[-] EMBL CA329461 [ ACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTTTAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA]
consensusID : consensus_2118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[AGTTTTACCTGACTGTCCTGGGAAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATGTAACAATGCAACCACTTTTTCAGGGCAACATGAGGAAAAATACTTGCTTACCGCATTTCTAAATTTGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAACAGTGTATACACTACCTCAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGAGATAAAGAGTTAGAAACCTGTCAACTGCATAAACAGCTACCTACTGCTAAAATCAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGACATTTGGTGGTCCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGACAGGAAAGCATAACCGAGTCATCCTTTTGAAACCATTAACCCAAGACATTTTAGCAGCATACCCCAGAGAACAAAAAATGCAGAAAGCCCACATTTGAATTTAGAACCACCCCAACTTACCACACAGGAGTTTTAAGTTTGTTTATTGCAAAAACACAACAAGCAAT]
[+] EMBL CA332560 [AGTTTTACCTGACTGTCCTGGGAAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATGTAACAATGCAACCACTTTTTCAGGGCAACATGAGGAAAAATACTTGCTTACCGCATTTCTAAATTTGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAACAGTGTATACACTACCTCAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGAGATAAAGAGTTAGAAACCTGTCAACTGCATAAACAGCTACCTACTGCTAAAATCAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGACATTTGGTGGTCCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGACAGGAAAGCATAACCGAGTCATCCTTTTGAAACCATTAACCCAAGACATTTTAGCAGCATACCCCAGAGAACAAAAAATGCAGAAAGCCCACATTTGAATTTAGAACCACCCCAACTTACCACACAGGAGTTTTAAGTTTGTTTATTGCAAAAACACAACAAGCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2118#0 TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAG 60
consensus_2118#1 ------------------------------------------------------------
consensus_2118#0 ATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAG 120
consensus_2118#1 ------------------------------------------------------------
consensus_2118#0 AAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGA 180
consensus_2118#1 ------------------------------------------------------------
consensus_2118#0 GGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCA 240
consensus_2118#1 ------------------------------------------------------------
consensus_2118#0 GGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAG 300
consensus_2118#1 --------------------------------------AGTTTTACCTGACTGTCCTGGG 22
* *** ** *** *
consensus_2118#0 GGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCA 360
consensus_2118#1 AAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATG----TAACAATGCAACC 78
* * **** ** * ** ** ** * * ** ** ** *** *
consensus_2118#0 GCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAG 420
consensus_2118#1 ACTTTT-TCAGGGCAACATGAGGAAAAA--TACT-TGCTTA-------CCGCATTTCTAA 127
** * ** *** ** * * * **** *** * * ** *
consensus_2118#0 GCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAA 480
consensus_2118#1 ATT----TGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAA--CAGTGTATA 181
* ** * * *** ** * ** **** *** ** ** *
consensus_2118#0 CAGAGTCAGCAACCTCAG--GACTACACCAAA-GCCTGGGAGGAGTATTACAAGAAACAA 537
consensus_2118#1 CACTACCT-CAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGA 240
** * **** * ** ** * * *** * * * * * *** ** *
consensus_2118#0 GGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGA 597
consensus_2118#1 GATAAAGAG----TTAGAAACCTGTCAACTGCATAAAC---AGCTACCTACTGCTAAAAT 293
* * *** * * * ** ***** * * *** * * *
consensus_2118#0 CAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGC 657
consensus_2118#1 CAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGA-CATTTGGTGGT 352
*** * ** * * * * ** **** * *** ***
consensus_2118#0 ACACCCAACCCTCAATCCATGGGTGCA-GCACCACAAGCCCCCCAGGGCCAGTAATGTGA 716
consensus_2118#1 CCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGA 412
* ** *** *** * *** * ** * * ** * * * * **
consensus_2118#0 AGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGAT 776
consensus_2118#1 CAGGAAAGCATAACCGA-GTCATCCTTTTGAAACCATTAACCCAAGACAT---TTTAGCA 468
* * * * * * * * * **** ** * ** * * * *** *
consensus_2118#0 GCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGAC 836
consensus_2118#1 GCATACCCC-----AGAGAACAAAAAATGCAGAAAGCCCACAT--TTGAATTTAGAACCA 521
*** ** ** *** * *** * * ** * ** * ****
consensus_2118#0 AGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGC 896
consensus_2118#1 CCCCAACTTACC--ACACAGGAGTTTTAAGTTTGT-TTATTGCAAAAACACAACAAGCAA 578
*** * * **** ***** *** * ** ** * **
consensus_2118#0 TCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAA 956
consensus_2118#1 T----------------------------------------------------------- 579
*
consensus_2118#0 TGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTT 1016
consensus_2118#1 ------------------------------------------------------------
consensus_2118#0 TAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA 1060
consensus_2118#1 --------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |