Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2125 cluster # 2125       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2125#0 length = 429 sequences # 3  
 consensus_2125#1 length = 360 sequences # 1  
consensusID : consensus_2125#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 429
fasta sequence 
                              [TAGTAGTGAAACATGGCCAACCAGATCGTGGAGACCACTCAAAGTCTCACCACTGCAGCAGAGATGCGGGAGACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAATATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGTGTTCATCTCCTCCTGTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGAGGGTTCAAGTACATCAAGTACCCAAAATCCTTCAGAGCCTGTCTGACGCAAGTGTGTAACTCAGGCTGGCAGGCTTTTAATGAGGGCCACAAGAACATGGATCAAATCCGGATTCACACGGGAACAGTTCCTGATTACATGAAGGCGGGAGGCAATGTTCTCTTTAACGGCAGGGATGATGTGGTCAAAACTCTTCTGCCAAACCAGCTGGACAAC]

[+] EMBL FR0059217            [TAGTAGTGAAACATGGCCAACCAGATCGTGGAGACCACTCAAAGTCTCACCACTGCCCCAGAGATGCGGGAGACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAATATCTGACCGCTGCTCCTCTCTCTATTGCTATAATGGGGGAGGTGGTGGTCATCTCCTCCTGTGAAGATTTCTCCATCAATGAGAACTGCCCAGAAGGAGGGTTCAAGTACATCAAGTACCCAAACTCCTTCAG                                                                                                                                                                                     ]
[+] EMBL FR0058559            [                            taatGACCACTCAAAGTCTCACCACTGCAGCGGAGATGTTTTAGACCACCAAAATGCTGACCCAGCCCAATGCAAACTGGGAGGAATATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGTGTTCATCTCCTCCTGTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGAGGTTTCAAGTACATCAAGTACCCAAAATCCTTCAGAGCCTGTCTGACGCAAGTGTGTAACTCAGGCTGGCAGGCTTTTAATGAGGGCCACAAGAACATGGATCAAATCCGGATTCACACGGGAACAGTTCCTGATTACATGAAGGCGGCTAGCAATGTTCTCTT                                                    ]
[+] EMBL FR0058958            [                                       CAAAGTCTCACCACTGCAGCAGAGATGCGGGAGACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAATATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGTGTTCATCTCCTCCTGTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGAGGGTTCAAGTACATCAAGTACCCAAAATCCTTCAGAGCCTGTCTGATGCAAGTGTGTAACTCAGGCTGGCAGGCTTTTAATGAGGCCCACAAGAACATGGATCAAATCCGTATTCACACGGGAACAGTTCCTGATTACATGAAGGCGGGAGTCAATGTTCTCTTTAACGGCAGGGATGATGTGGTCAAAACTCTTCTGCCAAACCAGCTGGACAAC]




>consensus_2125#0
TAGTAGTGAAACATGGCCAACCAGATCGTGGAGACCACTCAAAGTCTCACCACTGCAGCA
GAGATGCGGGAGACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAATATCTG
ACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGTGTTCATCTCCTCCTGTGAA
GATTTCTCCATCAATGAGAACCACCCAGAAGGAGGGTTCAAGTACATCAAGTACCCAAAA
TCCTTCAGAGCCTGTCTGACGCAAGTGTGTAACTCAGGCTGGCAGGCTTTTAATGAGGGC
CACAAGAACATGGATCAAATCCGGATTCACACGGGAACAGTTCCTGATTACATGAAGGCG
GGAGGCAATGTTCTCTTTAACGGCAGGGATGATGTGGTCAAAACTCTTCTGCCAAACCAG
CTGGACAAC

consensusID : consensus_2125#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence 
                              [CAGGAAAGTATTGAAACATGGTCAACCAGATCGTAAAGACCACTCAGAGGCTCACCACTGCAGCAGAGATGCGCCACACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAATATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGAGTTCATCTCCTCCTGTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGTGTTGAAAAGAAGTACCTTGATGTCATCTGTTTAATCCAGGAGCTGCTGGAAGCCTCCGTCAATGCTAAAAAATTTTATGGAGAAGAGCTTGAAAAGGTGAAGATGAAGCTAGAGGAAACTAAAATGAAAGAGAAGACAGCCA]

[+] EMBL FR0058303            [CAGGAAAGTATTGAAACATGGTCAACCAGATCGTAAAGACCACTCAGAGGCTCACCACTGCAGCAGAGATGCGCCACACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAATATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGAGTTCATCTCCTCCTGTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGTGTTGAAAAGAAGTACCTTGATGTCATCTGTTTAATCCAGGAGCTGCTGGAAGCCTCCGTCAATGCTAAAAAATTTTATGGAGAAGAGCTTGAAAAGGTGAAGATGAAGCTAGAGGAAACTAAAATGAAAGAGAAGACAGCCA]




>consensus_2125#1
CAGGAAAGTATTGAAACATGGTCAACCAGATCGTAAAGACCACTCAGAGGCTCACCACTG
CAGCAGAGATGCGCCACACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAAT
ATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGAGTTCATCTCCTCCT
GTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGTGTTGAAAAGAAGTACCTTGATG
TCATCTGTTTAATCCAGGAGCTGCTGGAAGCCTCCGTCAATGCTAAAAAATTTTATGGAG
AAGAGCTTGAAAAGGTGAAGATGAAGCTAGAGGAAACTAAAATGAAAGAGAAGACAGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2125#0      -----TAGTAGTGAAACATGGCCAACCAGATCGTGGAGACCACTCAAAGTCTCACCACTG 55
consensus_2125#1      CAGGAAAGTATTGAAACATGGTCAACCAGATCGTAAAGACCACTCAGAGGCTCACCACTG 60
                            **** ********** ************  ********** ** **********

consensus_2125#0      CAGCAGAGATGCGGGAGACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAAT 115
consensus_2125#1      CAGCAGAGATGCGCCACACCACCAAAATGCTGATGCAGCCCAATGCAAACTGGGAGGAAT 120
                      *************  * *******************************************

consensus_2125#0      ATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGTGTTCATCTCCTCCT 175
consensus_2125#1      ATCTGACCCCTGCTCCTCTCTCTATTGCTATAATGGGGGAGTTGGAGTTCATCTCCTCCT 180
                      ********************************************* **************

consensus_2125#0      GTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGAGGGTTCAAGTACATCAAGTACC 235
consensus_2125#1      GTGAAGATTTCTCCATCAATGAGAACCACCCAGAAGGTG--TTGAA----AAGAAGTACC 234
                      ************************************* *  ** **    *  *******

consensus_2125#0      CAAAATCCTTCAGAGCCTGTCTGACGCAAGTGTGTAACTCAGGCTGGCAGGCTTTTAATG 295
consensus_2125#1      TTGATGTCATC------TGTTTAATCCAGG-----AGCT---GCTGGAAGCCTCC--GTC 278
                         *   * **      *** * *  ** *     * **   ***** ** **     * 

consensus_2125#0      AGGGCCACAAGAAC--ATGGATCAAATCCGGATTCACACGGGAACAGTTCCTGATTACAT 353
consensus_2125#1      AATGCTAAAAAATTTTATGGAGAAGAGCTTGAAA-AGGTGAAGATGAAGCTAGAGGAAAC 337
                      *  ** * ** *    *****  * * *  **   *   *   *     *  **  * * 

consensus_2125#0      GAAGGCGGGAGGCAATGTTCTCTTTAACGGCAGGGATGATGTGGTCAAAACTCTTCTGCC 413
consensus_2125#1      TAAAATGAAAGAGAAGACAGCCA------------------------------------- 360
                       **   *  **  **      *                                      

consensus_2125#0      AAACCAGCTGGACAAC 429
consensus_2125#1      ----------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)