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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 548 fasta sequence
[ATCGTCCAGCAGTGGACAATCATCAAGTTTTCCTTGATGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTTGGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATAAAGGATTACCCTACA]
[+] EMBL FR0056825 [ATCGTCCAGCAGTGGACAATCATCAAGTTTTCCTTGATGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTAATCAAATCATAACTCC AAAATGTTCAACTGGTTTGGGATTTTTTTTA ]
[-] EMBL CA329382 [ TCATCAAGTTTTCCTTGATGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTTGGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATAAAGGATTACC ]
[-] EMBL CA331808 [ TTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTTGGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATAAAGGATTACCCTACA]
consensusID : consensus_2130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[GTTTCTAGATCACATCTGTGGTCAAGATTTCCTTATCTCACCAGCGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTGATACATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATA]
[-] EMBL CA329663 [GTTTCTAGATCACATCTGTGGTCAAGATTTCCTTATCTCACCAGCGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTGATACATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2130#0 ------ATCGTCCAGCAGTGGACAATCATCAAGT-TTTCCTTGATGACATTTTCGATTTC 53
consensus_2130#1 GTTTCTAGATCACATCTGTGGTCAAGATTTCCTTATCTCACCAGCGACATTTTCGATTTC 60
* ** * **** *** * * * ** ***************
consensus_2130#0 ATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGC 113
consensus_2130#1 ATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGC 120
************************************************************
consensus_2130#0 TTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAA 173
consensus_2130#1 TTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAA 180
******************************** ***** *********************
consensus_2130#0 TGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAA 233
consensus_2130#1 TGTTGTTTTATGCTAATCTTTATTCATTTTGATACATTTTTAATATGCTTTGATAATGAA 240
****************************** *** *************************
consensus_2130#0 TCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACAC 293
consensus_2130#1 TCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACAC 300
************************************************************
consensus_2130#0 TTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAG 353
consensus_2130#1 TTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAG 360
************************************************************
consensus_2130#0 TTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTT 413
consensus_2130#1 TTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTT 420
************************************************************
consensus_2130#0 ACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTT 473
consensus_2130#1 ACTGAGCTGATGAATCACGTGTTTATTCAAATCATA------------------------ 456
************************************
consensus_2130#0 GGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATA 533
consensus_2130#1 ------------------------------------------------------------
consensus_2130#0 AAGGATTACCCTACA 548
consensus_2130#1 ---------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |