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Takifugu rubripes
cluster # 2140 cluster # 2140       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2140#0 length = 619 sequences # 1  
 consensus_2140#1 length = 609 sequences # 3  
consensusID : consensus_2140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence 
                              [GATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAGAGGAAGAGCACTACGAGGAGATGAAGAAGAAGCACGCCGATCACCCTAAAATCAATCACCCGGGGAGCCAGAATCAGCTCAAAGAGGTCTGGGAGGAAGCTGATGGCCTGGACCCCGACGACTTCGACCCCAAGACCTTCTTCAAATTGCACGACACAAACGGAGATGGGTTTTTTGATGAACAGGAACTGGAGGCGCTCTTCACCAAGGAGTTGGAGAAAATCTACGACCCCAATAACGAAGAGGACGATATGATCGAGATGGAGGAAGAGAGGCTACGTATGCGGGAGCACGTTATGAACGAGGTGGACACCAACAAAGACAGACTCGTCTCTTTAGAGGAGTTCCTGGTCGCTACTCGGAAAAAGGAATTCCTGGAGCCCGACAGCTGGGAGACGTTGGAGCAGAATCAGGTTTACACAGACGAGGAGATGAGAGAGTTCGAGGAGCACCTCACTCAGCAGGAGCAGGACCTGAACATGAGGTCTGCCGACCTCCAGAAACAGAGAGACGATCTGGAGCGACAACAGGCCGAGCTCAACGCCCAGAAGGTTGAG]

[+] EMBL BU806526             [GATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAGAGGAAGAGCACTACGAGGAGATGAAGAAGAAGCACGCCGATCACCCTAAAATCAATCACCCGGGGAGCCAGAATCAGCTCAAAGAGGTCTGGGAGGAAGCTGATGGCCTGGACCCCGACGACTTCGACCCCAAGACCTTCTTCAAATTGCACGACACAAACGGAGATGGGTTTTTTGATGAACAGGAACTGGAGGCGCTCTTCACCAAGGAGTTGGAGAAAATCTACGACCCCAATAACGAAGAGGACGATATGATCGAGATGGAGGAAGAGAGGCTACGTATGCGGGAGCACGTTATGAACGAGGTGGACACCAACAAAGACAGACTCGTCTCTTTAGAGGAGTTCCTGGTCGCTACTCGGAAAAAGGAATTCCTGGAGCCCGACAGCTGGGAGACGTTGGAGCAGAATCAGGTTTACACAGACGAGGAGATGAGAGAGTTCGAGGAGCACCTCACTCAGCAGGAGCAGGACCTGAACATGAGGTCTGCCGACCTCCAGAAACAGAGAGACGATCTGGAGCGACAACAGGCCGAGCTCAACGCCCAGAAGGTTGAG]




>consensus_2140#0
GATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAA
AGAGGAAGAGCACTACGAGGAGATGAAGAAGAAGCACGCCGATCACCCTAAAATCAATCA
CCCGGGGAGCCAGAATCAGCTCAAAGAGGTCTGGGAGGAAGCTGATGGCCTGGACCCCGA
CGACTTCGACCCCAAGACCTTCTTCAAATTGCACGACACAAACGGAGATGGGTTTTTTGA
TGAACAGGAACTGGAGGCGCTCTTCACCAAGGAGTTGGAGAAAATCTACGACCCCAATAA
CGAAGAGGACGATATGATCGAGATGGAGGAAGAGAGGCTACGTATGCGGGAGCACGTTAT
GAACGAGGTGGACACCAACAAAGACAGACTCGTCTCTTTAGAGGAGTTCCTGGTCGCTAC
TCGGAAAAAGGAATTCCTGGAGCCCGACAGCTGGGAGACGTTGGAGCAGAATCAGGTTTA
CACAGACGAGGAGATGAGAGAGTTCGAGGAGCACCTCACTCAGCAGGAGCAGGACCTGAA
CATGAGGTCTGCCGACCTCCAGAAACAGAGAGACGATCTGGAGCGACAACAGGCCGAGCT
CAACGCCCAGAAGGTTGAG

consensusID : consensus_2140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 609
fasta sequence 
                              [TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACACTTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTACGATAAAGAACGACACGATGAGTTCAAGAGGTATGAAATGATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAG]

[+] EMBL BU805576             [TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAATCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACACTTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTACGATAAAGAACGACACGATGAGTTCAAGAGGTATGAAATGATGAAAGAACACAACAGACAGGAGCACCTGAAG                            ]
[+] EMBL CA589650             [TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCAC                                                                                                                                                                               ]
[+] EMBL CA588927             [          CCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACACTTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTACGATAAAGAACGACACGATGAGTTCAAGAGGTATGAAATGATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAG]




>consensus_2140#1
TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATT
TAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCG
AAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCA
TCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAAGCTCCGCAACACAGACATGGAAG
ACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAA
AACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGC
AAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTG
AGTACTTGAACCACATGAATCCACACACTTTTGAAGTGGATGATCTGGATCTGCTCATCA
AATCGGCCACGAACGACCTGGAGAATTACGATAAAGAACGACACGATGAGTTCAAGAGGT
ATGAAATGATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGA
GGAGGAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2140#0      GATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAG-GAGGA 59
consensus_2140#1      ------------------TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGC 42
                                           *  * * * * *  *  * ****    *** *  *  * 

consensus_2140#0      AAGAGGAAGAGCACTACGAGGAGATGAAGAAGAAGCACGCCGATCACCCTAAAATCAATC 119
consensus_2140#1      TGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGC 102
                        *   *    *  **    **      *   *    *   *** *  * *** **** *

consensus_2140#0      ACCCGGGGAGCCAGAATCAGCTCAAAGAGGTCTGGGAGGAAGCTGATGGCCTGGACCCCG 179
consensus_2140#1      AACCAG------AGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACA--CTGGACTCCA 154
                      * ** *      ****  * * * ** **  *   * *   *  **    ****** ** 

consensus_2140#0      --ACGACTTCGACCCCAAGACCTTCTTCAAATTGCACGACACAAACGGAGAT-------G 230
consensus_2140#1      CTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGA 214
                        * ***  * *** ** *    ** ** * ** * *** * * *** * **        

consensus_2140#0      GGTTTTTTGATGAACAGGAACTGGAGGCGCTCTTCA-----------CCAAGGAGTTGGA 279
consensus_2140#1      AAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGA 274
                           *  *    ****  *  * ** *      **           * ** *** ****

consensus_2140#0      GAAAATCTACGACCCCAATAACGAAGAGGACGATATGATCGAGATGGAGGAAGAGAGGCT 339
consensus_2140#1      CTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCG 334
                           *     * * **  *    * *    ***  * *  *** * **** * **  * 

consensus_2140#0      ACGTATGCGGGAGCACGTTATGAACGAGGTGGACACCAACAAAGACAGACTCGTCTCTTT 399
consensus_2140#1      AC---TCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAA---TGACATATC 388
                      **   * ***   *   *** *  * **   ***  * *   ** **     * *   * 

consensus_2140#0      AGAGGAGTTCCTGGTCGCTACTCGGAAAAAGGAATTCCTGGAGCCCGACAGCTGGGAGAC 459
consensus_2140#1      GGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACAC 448
                       * ***   ** **    *     * *    ** * * ** * * *   *      * **

consensus_2140#0      GTT-GGAGCAGA--ATCAGGTTTACACAGACGAGGAGATGAGAGAGTTCGAGGAGCACCT 516
consensus_2140#1      TTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTA 508
                       ** * **  **  *** ** *        * *   *   *   *   *  **** *   

consensus_2140#0      CACTCAGCAGGAGCAGGACCTGAACATGAGGTCTGCCGACCTCCAGAAACAGAGAGACGA 576
consensus_2140#1      CGATAAAGAACGACACGATGAGTTCAAGAGGTATG---AAATGATGAAAGAACACAACAG 565
                      *  * *  *    ** **   *  ** ***** **   *  *   **** *     **  

consensus_2140#0      TCTGGAGCGACAACAGGCCGAGCTCAACGCCCAGAAGGTTGAG- 619
consensus_2140#1      ACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAG 609
                       * *****  *   ** *   *  *****   *** *    *


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)