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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 607 fasta sequence
[TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGGCCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGCTGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTTACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACCTGGAGAAG]
[+] EMBL CA591177 [TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGAC ACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCCGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTCCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGTTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGGCCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGCTGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTTACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACCTGGAGAAG]
[+] EMBL FR0058087 [ GTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTG ]
[+] EMBL FR0058221 [ GTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTG ]
consensusID : consensus_2144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGGCTACGACGACGCTGTCGGCTCCCCGCACCCCCACGGACGTCAGCCCGCCCTGAGAGATGGCTTTAAAGGCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAAATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGAACCCTTGAGCAAGGCACCGAACCGCTA]
[+] EMBL CA332870 [GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGGCTACGACGACGCTGTCGGCTCCCCGCACCCCCACGGACGTCAGCCCGCCCTGAGAGATGGCTTTAAAGGCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAAATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGAACCCTTGAGCAAGGCACCGAACCGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2144#0 TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACC 60
consensus_2144#1 -------GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGG--CTACG 51
** *** ** **** * * * * ** * *** * **
consensus_2144#0 AACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGA 120
consensus_2144#1 ACGACGCTGTCGGCTCCCCGCACC----CCCACGGACGTCAGC--------CCGCCCTGA 99
* * * ** * ** * ** * ** **** ** * * *** **
consensus_2144#0 GGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTC 180
consensus_2144#1 GAGATGGCTTTA--AAG----GCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAA 153
* * * ** ** *** ** * *** * * ** * * * *
consensus_2144#0 CGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGA-CA 239
consensus_2144#1 -ATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGA--ACCCTTGAGCA 210
** ***** * * * * ** ** ** * ** * * *** **
consensus_2144#0 AGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCG 299
consensus_2144#1 AGGCACCGAACCGCTA-------------------------------------------- 226
** * * ** **
consensus_2144#0 TGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAG 359
consensus_2144#1 ------------------------------------------------------------
consensus_2144#0 GAGAGTGGAAGTACAAGGTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGG 419
consensus_2144#1 ------------------------------------------------------------
consensus_2144#0 CCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGC 479
consensus_2144#1 ------------------------------------------------------------
consensus_2144#0 TGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTT 539
consensus_2144#1 ------------------------------------------------------------
consensus_2144#0 ACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACC 599
consensus_2144#1 ------------------------------------------------------------
consensus_2144#0 TGGAGAAG 607
consensus_2144#1 --------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |