These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 607 fasta sequence [TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGGCCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGCTGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTTACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACCTGGAGAAG] [+] EMBL CA591177 [TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGAC ACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCCGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTCCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGTTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGGCCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGCTGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTTACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACCTGGAGAAG] [+] EMBL FR0058087 [ GTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTG ] [+] EMBL FR0058221 [ GTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTG ] consensusID : consensus_2144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGGCTACGACGACGCTGTCGGCTCCCCGCACCCCCACGGACGTCAGCCCGCCCTGAGAGATGGCTTTAAAGGCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAAATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGAACCCTTGAGCAAGGCACCGAACCGCTA] [+] EMBL CA332870 [GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGGCTACGACGACGCTGTCGGCTCCCCGCACCCCCACGGACGTCAGCCCGCCCTGAGAGATGGCTTTAAAGGCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAAATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGAACCCTTGAGCAAGGCACCGAACCGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2144#0 TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACC 60 consensus_2144#1 -------GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGG--CTACG 51 ** *** ** **** * * * * ** * *** * ** consensus_2144#0 AACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGA 120 consensus_2144#1 ACGACGCTGTCGGCTCCCCGCACC----CCCACGGACGTCAGC--------CCGCCCTGA 99 * * * ** * ** * ** * ** **** ** * * *** ** consensus_2144#0 GGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTC 180 consensus_2144#1 GAGATGGCTTTA--AAG----GCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAA 153 * * * ** ** *** ** * *** * * ** * * * * consensus_2144#0 CGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGA-CA 239 consensus_2144#1 -ATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGA--ACCCTTGAGCA 210 ** ***** * * * * ** ** ** * ** * * *** ** consensus_2144#0 AGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCG 299 consensus_2144#1 AGGCACCGAACCGCTA-------------------------------------------- 226 ** * * ** ** consensus_2144#0 TGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAG 359 consensus_2144#1 ------------------------------------------------------------ consensus_2144#0 GAGAGTGGAAGTACAAGGTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGG 419 consensus_2144#1 ------------------------------------------------------------ consensus_2144#0 CCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGC 479 consensus_2144#1 ------------------------------------------------------------ consensus_2144#0 TGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTT 539 consensus_2144#1 ------------------------------------------------------------ consensus_2144#0 ACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACC 599 consensus_2144#1 ------------------------------------------------------------ consensus_2144#0 TGGAGAAG 607 consensus_2144#1 -------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |