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Takifugu rubripes
cluster # 2144 cluster # 2144       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2144#0 length = 607 sequences # 3  
consensus_2144#1 length = 226 sequences # 1  

consensusID : consensus_2144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 607
fasta sequence
                              [TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGGCCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGCTGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTTACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACCTGGAGAAG]

[+] EMBL CA591177             [TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGAC ACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCCGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTCCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGTTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGGCCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGCTGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTTACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACCTGGAGAAG]
[+] EMBL FR0058087            [                                                     GTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTG                                                                                                                                                                                                                                   ]
[+] EMBL FR0058221            [                                                     GTCCACCAACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTCCGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAAGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGTGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGGAGAGTGGAAGTACAAGGTTG                                                                                                                                                                                                                                   ]


>consensus_2144#0 TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACC AACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGA GGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTC CGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGACAA GCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCGT GATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAGG AGAGTGGAAGTACAAGGTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGGC CGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGCT GATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTTA CTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACCT GGAGAAG



consensusID : consensus_2144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence
                              [GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGGCTACGACGACGCTGTCGGCTCCCCGCACCCCCACGGACGTCAGCCCGCCCTGAGAGATGGCTTTAAAGGCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAAATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGAACCCTTGAGCAAGGCACCGAACCGCTA]

[+] EMBL CA332870             [GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGGCTACGACGACGCTGTCGGCTCCCCGCACCCCCACGGACGTCAGCCCGCCCTGAGAGATGGCTTTAAAGGCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAAATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGAACCCTTGAGCAAGGCACCGAACCGCTA]


>consensus_2144#1 GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGGCTACGACGACGCTG TCGGCTCCCCGCACCCCCACGGACGTCAGCCCGCCCTGAGAGATGGCTTTAAAGGCATAT TCTGCAAGAAAGACCCGGAGGGAAGTTCATGAAATGAGGGTGTTGAAGGGTTGAAACACG CACGGTGCACTGCCGAGGAACCCTTGAGCAAGGCACCGAACCGCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2144#0      TTGAGCCTCCAGCACGTTCACGCTGGTTCTGAAACGCTCTCTCGGGTATCTGGGTCCACC 60
consensus_2144#1      -------GGGTGCGCGTGTGCGTGATTTCTTACAGGAATTTTCTTTTGCGTGG--CTACG 51
                                 ** ***   **    **** * * *   * **   *   ***  * ** 

consensus_2144#0      AACATGTCCCGGGGTTCCAACGCCGGCTTCGACCGACGACATCACCATCTTCTCCCCGGA 120
consensus_2144#1      ACGACGCTGTCGGCTCCCCGCACC----CCCACGGACGTCAGC--------CCGCCCTGA 99
                      *  * *     ** * **  * **     * ** **** ** *        *  *** **

consensus_2144#0      GGGCCGCCTCTACCAAGTCGAATATGCCTTTAAAGCCATCTCTCAGGGCGGGCTGACGTC 180
consensus_2144#1      GAGATGGCTTTA--AAG----GCATATTCTGCAAGAAAGACCCGGAGGGAAGTTCATGAA 153
                      * *  * ** **  ***      **    *  ***  *   *    **   * * * *  

consensus_2144#0      CGTGGGGGTGCGGGGAGCCGACAGCGTCGTCGTAGCCACGCAAAAGAAAATTCCTGA-CA 239
consensus_2144#1      -ATGAGGGTGTTGAAGGGTTGAAACACGCACGGTGCACTGCCGAGGA--ACCCTTGAGCA 210
                        ** *****  *   *     * *     **  **   **  * **  *  * *** **

consensus_2144#0      AGCTGCTGGACTCCTCCACTGTCACCAACATGTTCCGACTCACCCCCCGCATCGGCTGCG 299
consensus_2144#1      AGGCACCGAACCGCTA-------------------------------------------- 226
                      **   * * **  **                                             

consensus_2144#0      TGATGACAGGCCACAGCGCCGACAGCCGCTTCCAGGTCCACCGGGCTCGCGTGGAGGCAG 359
consensus_2144#1      ------------------------------------------------------------
                                                                                  

consensus_2144#0      GAGAGTGGAAGTACAAGGTTGGTTATGACGTCACAGCGGAGGTGTTGTGCCGCCGGCTGG 419
consensus_2144#1      ------------------------------------------------------------
                                                                                  

consensus_2144#0      CCGACATCTCCCAGGTGTACACGCAGAACGCTGAGATGAGGCCGCTGGGCTGCTGTATGC 479
consensus_2144#1      ------------------------------------------------------------
                                                                                  

consensus_2144#0      TGATGGTGGCCATGGACCCCCTGCTGGGTCCTGCCCTCTACAAATGTGACCCTGCANGTT 539
consensus_2144#1      ------------------------------------------------------------
                                                                                  

consensus_2144#0      ACTACTGTGGCTTCAGGGCCACTGCAGTCGGGGCCAAACAGACAGAAGCCAACAGCTACC 599
consensus_2144#1      ------------------------------------------------------------
                                                                                  

consensus_2144#0      TGGAGAAG 607
consensus_2144#1      --------
                              




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)