These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 469 fasta sequence [CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAG-CTGGAAAAGCGGGGGAGGCTTCTCCTCCCCCGGCCGNCCTGGGGCTCNTCTCCCTGTGCTTCNGCCTGAGCATCGCCCCCCTGGTGCCGGGCTTCGGCCCCCTCAGCGGCGGACACCTCANCCCGGCCGTCACCG] [+] EMBL BU804737 [CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAGCCTGGAAAAGCGGGGGAGGCTTCTCCTCCCCCGGCCGNCCTGGGGCTCNTCTCCCTGTGCTTCNGCCTGAGCATCGCCCCCCTGGTGCCGGGCTTCGGCCCCCTCAGCGGCGGACACCTCANCCCGGCCGTCACCG] [+] EMBL BU804930 [CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAG CTGGAAAAGCGGGGGA ] [+] EMBL FR0064034 [ TGCTCCGCTCGTGCGCTCCCGTGGCCCGATTCGCTCCCGTAAGTACCCCGGCAACCGGTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGATGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAG CTGGAAA GCGGGGAGGCTTCTCCTCCCCCGGCCGACCTGGGGCTCATCTCCCTGTGCTTCGGCCT ] consensusID : consensus_2145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [GTAGCGACTTAATAAAGCTGCTGTACTCGATCCAGCTCCACTATGTGTGGCTGGCGGCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGAGGATCCTGCGACGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGCACCAAGGAGTTCTGGAGGGCCGCGTCCGGGGAATTCCTGGCCACCTTCATCTTCAGCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAAGCGGGGGAGGCTTCTCCTCCCCCGACCGAGCTGGNGCTCATCTACCTGTGCTTCGGGCT] [+] EMBL FR0063700 [GTAGCGACTTAATAAAGCTGCTGTACTCGATCCAGCTCCACTATGTGTGGCTGGCGGCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGAGGATCCTGCGACGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGCACCAAGGAGTTCTGGAGGGCCGCGTCCGGGGAATTCCTGGCCACCTTCATCTTCAGCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAAGCGGGGGAGGCTTCTCCTCCCCCGACCGAGCTGGNGCTCATCTACCTGTGCTTCGGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2145#0 CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTC 60 consensus_2145#1 ------------------------------------------------------------ consensus_2145#0 CCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCG 120 consensus_2145#1 --------------GTAGCGACTTAA---TAAAGCTGCTGTACTCG---ATCCAGCTCCA 40 * * * * * * ***** * * * * **** consensus_2145#0 CCGGGTGCG-TAGCCGGACTCATGAGTGAGA-GCACATCGGGCTGGTCAGGGACACAGGG 178 consensus_2145#1 CTATGTGTGGCTGGCGGCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGT 100 * *** * * *** * *** ** ** * * * * ** * * * * consensus_2145#0 AGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTT 238 consensus_2145#1 GGCCCGA-CGCGCTCCCG-------AGGATCCTGCGACGTTGTGACATCATGGCGGCTTT 152 * ** ** **** ** *** ******* *********************** consensus_2145#0 CAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTT 298 consensus_2145#1 CAAAGGCATCTGCACCAAGGAGTTCTGGAGGGCCGCGTCCGGGGAATTCCTGGCCACCTT 212 ************ ********************** ************************ consensus_2145#0 CATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAAAGCGGGGGAGGCTTCTC 358 consensus_2145#1 CATCTTCAGCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAA-GCGGGGGAGGCTTCTC 271 ******* ********************************** **************** consensus_2145#0 CTCCCCCGGCCGNCCTGGGGCTCNTCTCCCTGTGCTTCNGCCTGAGCATCGCCCCCCTGG 418 consensus_2145#1 CTCCCCCGACCGAGCTGGNGCTCATCTACCTGTGCTTCGGGCT----------------- 314 ******** *** **** **** *** ********** * ** consensus_2145#0 TGCCGGGCTTCGGCCCCCTCAGCGGCGGACACCTCANCCCGGCCGTCACCG 469 consensus_2145#1 --------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |