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Takifugu rubripes
cluster # 2146 cluster # 2146       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2146#0 length = 385 sequences # 3  
 consensus_2146#1 length = 268 sequences # 1  
consensusID : consensus_2146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 385
fasta sequence 
                              [AGGCATCGTTTAGATTTGGGCGATGACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGAGATCCTGGAGAAACGGGTGCAGCCTCCCGTCTGGGAATACAAGGAGAGCTTTAGTGACATCATCACACGCCATCAGACGTTTGGTC]

[+] EMBL FR0059860            [AGGCATCGTTTAGATTTGGGCGATGACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGAGATCCTGGAGAAACGGGTGCAGCCTt                                                            ]
[+] EMBL FR0059874            [ GGCATCGTTTAGATTTGGGCGATGACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGA                                                                                      ]
[+] EMBL FR0058176            [                         ACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGAGATCCTGAAGAAACGGTTGCAGCTTCCCGTCTGGGAATACAAGGAGAGCTTTAGTGACATCATCACACGCCATCAGACGTTTGGTC]




>consensus_2146#0
AGGCATCGTTTAGATTTGGGCGATGACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGAC
AGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGGCAGGGACCGAGATCGG
GACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCG
CCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATG
GCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGAG
ATCCTGGAGAAACGGGTGCAGCCTCCCGTCTGGGAATACAAGGAGAGCTTTAGTGACATC
ATCACACGCCATCAGACGTTTGGTC

consensusID : consensus_2146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence 
                              [AAGGCAAATATCCGAGAGATTGAGGATTTTGCATACATTANCATAATTGTGCTATGTTAGCTGCTGGCGCGGCACTGGCTAACCAGCAGAACGTGTAGTTATCTTCGACGCAGGGGCACGTGTGTATGGCTAGCGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGGAGACACAAAGCCGCCTAG]

[+] EMBL FR0060547            [AAGGCAAATATCCGAGAGATTGAGGATTTTGCATACATTANCATAATTGTGCTATGTTAGCTGCTGGCGCGGCACTGGCTAACCAGCAGAACGTGTAGTTATCTTCGACGCAGGGGCACGTGTGTATGGCTAGCGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGGAGACACAAAGCCGCCTAG]




>consensus_2146#1
AAGGCAAATATCCGAGAGATTGAGGATTTTGCATACATTANCATAATTGTGCTATGTTAG
CTGCTGGCGCGGCACTGGCTAACCAGCAGAACGTGTAGTTATCTTCGACGCAGGGGCACG
TGTGTATGGCTAGCGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTC
CAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGA
CAGAGACCGGAGACACAAAGCCGCCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2146#0      ------------------------------------------------------------
consensus_2146#1      AAGGCAAATATCCGAGAGATTGAGGATTTTGCATACATTANCATAATTGTGCTATGTTAG 60
                                                                                  

consensus_2146#0      ---------AGGCATCGTTTAG--ATTTGGGCG-ATGACTA-CTCCA--GTAAGAAGAGG 45
consensus_2146#1      CTGCTGGCGCGGCACTGGCTAACCAGCAGAACGTGTAGTTATCTTCGACGCAGGGGCACG 120
                                ****  *  **   *   *  **  *   ** ** *   * * *   * *

consensus_2146#0      TCTG-ATGG------GCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTC 98
consensus_2146#1      TGTGTATGGCTAGCGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTC 180
                      * ** ****      *********************************************

consensus_2146#0      CAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGA 158
consensus_2146#1      CAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGA 240
                      ***** ******************************************************

consensus_2146#0      CAGAGACCG-AGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAA 217
consensus_2146#1      CAGAGACCGGAGACACAAAGCCGCCTAG-------------------------------- 268
                      ********* ******************                                

consensus_2146#0      TTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTAC 277
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      CACACACACCGCGATACTACGAGATCCTGGAGAAACGGGTGCAGCCTCCCGTCTGGGAAT 337
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      ACAAGGAGAGCTTTAGTGACATCATCACACGCCATCAGACGTTTGGTC 385
consensus_2146#1      ------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)