These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 760 fasta sequence [TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCACTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGGTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCTGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCAGTCTGGACTGGCATCCCAACAATGTCCTTCTAACTGCTGGATCCTGCGATTTCAAGTGCAGGGTCTTCTCAGCCTACCTTAAAGAGGTGGAAGAGAAGCCCGGCCCCACCTCTTGGGGCAGCAAGATGCCTTTCGGGGAGATGCTGTTT] [+] EMBL BU807123 [TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCACTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGGTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCTGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCAGT ] [+] EMBL BU807195 [TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCACTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGGTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCATTTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCTGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCA ] [+] EMBL CA845591 [ TCAGGTTTTTTTTCTACCAGGTTCCTC AGTC CCTCCAAGGCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCCGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCAGTCTGGACTGGCATCCCAACAATGTCCTTCTAACTGCTGGATCCTGCGATTTCAAGTGCAGGGTCTTCTCAGCCTACCTTAAAGAGGTGGAAGAGAAGCCCGGCCCCACCTCTTGGGGCAGCAAGATGCCTTTCGGGGAGATGCTGTTT] consensusID : consensus_2152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [CCTGTGGTGTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGTTTTTTTTCTACCAGGTTCCTCAAGGCACTTCCTGGGCCGGTTCTCACGCCTGATTGGGCATGGCGCACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAATCACGAGGGTCACATCTACAAGCAAGAGGGGAGCAAATGGTGCAAGATCCATGAACTGAGGGAGCACAATG] [+] EMBL FR0061611 [CCTGTGGTGTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGTTTTTTTTCTACCAGGTTCCTCAAGGCACTTCCTGGGCCGGTTCTCACGCCTGATTGGGCATGGCGCACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAATCACGAGGGTCACATCTACAAGCAAGAGGGGAGCAAATGGTGCAAGATCCATGAACTGAGGGAGCACAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2152#0 TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCA 60 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 CTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATC 120 consensus_2152#1 ----------CCTGTGGTGTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATC 50 ** * ***************************************** consensus_2152#0 CCTCAGG---------------GTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTG 165 consensus_2152#1 CCTCAGGTTTTTTTTCTACCAGGTTCCTCAAGGCACTTCCTGGGCCGGTTCTCACGCCTG 110 ******* ********** ********** ************ *** consensus_2152#0 ATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAA 225 consensus_2152#1 ATTGGGCATGGCGCACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAA 170 ***** ******* ********************************************** consensus_2152#0 AGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGA 285 consensus_2152#1 AGATCGTACCCAGGTGGCGCTGTGTCCCAATAATCACGAGGGTCACATCTACAAGCAAGA 230 ********************************* ******* ****************** consensus_2152#0 GGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGT 345 consensus_2152#1 GGGGAGCAAATGGTGCAAGATCCATGAACTGAGGGAGCACAATG---------------- 274 ************* ****************** *********** consensus_2152#0 CGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGT 405 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 GTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGC 465 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 TGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCG 525 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 TCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAA 585 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 GAAGCCCATCCGCTCCACCATCCTCAGTCTGGACTGGCATCCCAACAATGTCCTTCTAAC 645 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 TGCTGGATCCTGCGATTTCAAGTGCAGGGTCTTCTCAGCCTACCTTAAAGAGGTGGAAGA 705 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 GAAGCCCGGCCCCACCTCTTGGGGCAGCAAGATGCCTTTCGGGGAGATGCTGTTT 760 consensus_2152#1 ------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |