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Takifugu rubripes
cluster # 2165 cluster # 2165       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2165#0 length = 635 sequences # 3  
 consensus_2165#1 length = 577 sequences # 1  
consensusID : consensus_2165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 635
fasta sequence 
                              [CCTCCCCGCAGACAGCGCGTCCTGTCGCCTTCCTCAGCGCAATG-GTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGCCTCCTCTTAGAGT]

[+] EMBL CA591549             [CCTCCCCGCAGACAGCGCGTCCTGTCGCCTTCCTCAGCGCACTGTGTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGCCTCCTCTTAGAGT]
[+] EMBL CA589866             [                        TCGCCTTCCTCAGCGCAATG GTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAGGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAATATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCA                                                                                                                   ]
[+] EMBL BU805408             [                        TCGCCTTCCTCAGCGCAATG GTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATG                                                                                                                                       ]




>consensus_2165#0
CCTCCCCGCAGACAGCGCGTCCTGTCGCCTTCCTCAGCGCAATGGTCTCCTGGATCATCT
CTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTG
TGAAGTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCC
TGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATG
AGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGC
TGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATA
TCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCA
ATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACA
AACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCG
ATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCA
AATCGGAGGGCTACAGCAAAGCCTCCTCTTAGAGT

consensusID : consensus_2165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence 
                              [GGGAACGAAGGTGATTCTGACTGTCTGTGGCTGTGACCCTTCAGGTGAAATGGATGGTGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGGACAGGATTGTGACATGGCTGATTTTGAAGTGTTGAGGTTTGACCAATCGGACGTGAG]

[+] EMBL BU804827             [GGGAACGAAGGTGATTCTGACTGTCTGTGGCTGTGACCCTTCAGGTGAAATGGATGGTGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGGACAGGATTGTGACATGGCTGATTTTGAAGTGTTGAGGTTTGACCAATCGGACGTGAG]




>consensus_2165#1
GGGAACGAAGGTGATTCTGACTGTCTGTGGCTGTGACCCTTCAGGTGAAATGGATGGTGT
ACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTT
GGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACA
CGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAA
AGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATT
ATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTC
AAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGT
CTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAA
AAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGGACAGGATTGTGACATGGCTG
ATTTTGAAGTGTTGAGGTTTGACCAATCGGACGTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2165#0      CCTCCCCGCAGACAGCGCGTCCTGTCGCCTTCCTCAGCGCAATGGTCTCCTGGATCATCT 60
consensus_2165#1      ------------------------------------------------------------
                                                                                  

consensus_2165#0      CTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTG 120
consensus_2165#1      -------------------------------------------GGGAACGAAGGTGATTC 17
                                                                      *  *      * 

consensus_2165#0      TGAA-GTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCC 179
consensus_2165#1      TGACTGTCTGTGGCTGTGACCCTTCAGGTGAAATGGATGGTGTACTGGATAATATTTGCC 77
                      ***  ***    * * ***      * ************ ********************

consensus_2165#0      CTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTAT 239
consensus_2165#1      CTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTAT 137
                      ************************************************************

consensus_2165#0      GAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTG 299
consensus_2165#1      GAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTG 197
                      ************************************************************

consensus_2165#0      CTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATAT 359
consensus_2165#1      CTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATAT 257
                      ************************************************************

consensus_2165#0      ATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTC 419
consensus_2165#1      ATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTC 317
                      ************************************************************

consensus_2165#0      AATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGAC 479
consensus_2165#1      AATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGAC 377
                      ************************************************************

consensus_2165#0      AAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCC 539
consensus_2165#1      AAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCC 437
                      ************************************************************

consensus_2165#0      GATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGC 599
consensus_2165#1      GATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGC 497
                      ************************************************************

consensus_2165#0      AAATCGGAGGGCTACAGCAAAGCCTCCTCTTAGAGT------------------------ 635
consensus_2165#1      AAATCGGAGGGCTACAGCAAAGGACAGGATTGTGACATGGCTGATTTTGAAGTGTTGAGG 557
                      **********************       **                             

consensus_2165#0      --------------------
consensus_2165#1      TTTGACCAATCGGACGTGAG 577


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)