These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence [CCGCCATGTTGGCCATGGCGTATTGAACCGGGGAGGAACAGCGGAGCCTAGCAATTGAGATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGGACCTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGC--TTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCACAGCACTGCAGTTTGAAGAAATGATAGACCGGCTGGAGAAAGGCAGCGGAAAACAGCTCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAGTATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT] [+] EMBL CA589732 [CCGCCATGTTGGCCATGGCGTATTGAACCGGGGAGGAACAGCGGAGCCTAGCAATTGAGATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGGACCTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGCTTTTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAAT ] [+] EMBL CA588523 [ GGCTCTGTTCGCCCTGCTACGCCCTTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGC TTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCACAGCACTGCAGTTTGAAGAAATGATAGACCGGCTGGAGAAAGGCAGCGGAAAACAGCTCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAGTATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT] consensusID : consensus_2186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGGCCTTCCGTCGACGGACAGAGAAGATGCAGACGAGGAAGAATCGAAAGAATGACGAGGTGTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGAGATGATCAAGAGGAGGGAGAAGAGCAAGCGGGAGCTGCTCCATCTCACACTAGAGATCGTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGCAGAAGCACTCGCACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCAACCAGTACAGACACCAGGACCATTTGGATTTTAAGGACTACAAAAAACCAGAGAAGACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAAACCCAAAATTCCCCCACTGTCAGCACCTCAGCACTCAGGTCCCTCTATTTTCAGTCTCAAGGACCTCAATCAGTATGACTTTCCAAGCTCGGATGAAGAGCCTCTCTCCCAGATTCATTCAGGTTCTTCAGAGACAGAGGAGGAGAATGACCCAGATGGCTGCTATGCTTTCAGGAGAAAGGCTGGCTGTCAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGACGGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGTTGCATAGGCTTGGCACGGCGCCGCGTGGGC] [+] EMBL CA588109 [CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGGCCTTCCGTCGACGGACAGAGAAGATGCAGACGAGGAAGAATCGAAAGAATGACGAGGTGTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGAGATGATCAAGAGGAGGGAGAAGAGCAAGCGGGAGCTGCTCCATCTCACACTAGAGATCGTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGCAGAAGCACTCGCACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCAACCAGTACAGACACCAGGACCATTTGGATTTTAAGGACTACAAAAAACCAGAGAAGACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAAACCCAAAATTCCCCCACTGTCAGCACCTCAGCACTCAGGTCCCTCTATTTTCAGTCTCAAGGACCTCAATCAGTATGACTTTCCAAGCTCGGATGAAGAGCCTCTCTCCCAGATTCATTCAGGTTCTTCAGAGACAGAGGAGGAGAATGACCCAGATGGCTGCTATGCTTTCAGGAGAAAGGCTGGCTGTCAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGACGGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGTTGCATAGGCTTGGCACGGCGCCGCGTGGGC] consensusID : consensus_2186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAAGATCCGTGCCGACGACCTGTATCTGTCCCGCCGAGCTCTGCTTCCCAGCGACGCGTCTCTGTGGGTCGGACACACTTTTGGCGACAGAATAATTCCAAACGTTTTTTTTCCGCTTTTCCTCAGAGGAATCCCGAGGGCTGCTAAGTTAGCGTTAGCATGACAAACCCAAGCGCTGCCATCATCCTCCCTTGTGGCTTTCCTCACAACAGATCTCCATTATGGACTACAAATGTCAGTGTATGGCTTCCAAATGGATAATAATGAGGATCTCAGTCTGCAGACATCTGTGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCACAGCA] [+] EMBL CA332750 [TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAAGATCCGTGCCGACGACCTGTATCTGTCCCGCCGAGCTCTGCTTCCCAGCGACGCGTCTCTGTGGGTCGGACACACTTTTGGCGACAGAATAATTCCAAACGTTTTTTTTCCGCTTTTCCTCAGAGGAATCCCGAGGGCTGCTAAGTTAGCGTTAGCATGACAAACCCAAGCGCTGCCATCATCCTCCCTTGTGGCTTTCCTCACAACAGATCTCCATTATGGACTACAAATGTCAGTGTATGGCTTCCAAATGGATAATAATGAGGATCTCAGTCTGCAGACATCTGTGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCACAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2186#0 CCGCCATGTTGGCCATGGCGTATTGAACCGG--GGAGGAACAGCGGAGCCTAGCAATTGA 58 consensus_2186#2 -TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAA 59 consensus_2186#1 -CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGG 59 * * ** * * * * ** * * consensus_2186#0 GATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGG 118 consensus_2186#2 GAT-CCGTGCCG--ACGACCTGTATCTGT--CCCGCCGAGCTCTGCTT-CCCAGCGACGC 113 consensus_2186#1 CCTTCCGTCGACGGACAGAGAAGATGCAG--ACGAGGAAGAATCGAAAGAATGACGAGGT 117 * *** * * * * * * * * consensus_2186#0 ACC---TAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTT-TCATCCATGA 174 consensus_2186#2 GTC---TCTGTGGGTCG------GACACACTTTTGGCGACAGAATAATT-CCAAACGTTT 163 consensus_2186#1 GTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGA 177 * * * ** * * * ** * consensus_2186#0 GATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGAT-TTATGCTGCCGCTT 233 consensus_2186#2 TTTTTCCGCTTTTCCTCAGAGGAATCCCGAG---GGCTGCTAAGT-TAGCGTTAGCATGA 219 consensus_2186#1 GATGATCAAGAGGAGGGAGAAGAGCAAGCGG--GAGCTGCTCCATCTCACACTAGAGATC 235 * * * * * * * consensus_2186#0 AATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTG 293 consensus_2186#2 CAAACCCAAGCGCTGCCATCATCCTCCCTTGTG---GCTTTCCTCAC-AACAGATCTC-- 273 consensus_2186#1 GTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGC-AGAAGCACTC-G 293 * * * * * * * * * * *** consensus_2186#0 CCCGTCTTCCGCTGCGAGGATTTGCCTG-ACCTGCATGAATATGCCTCGATCAACCGAGC 352 consensus_2186#2 --CATTATGGACTACAAATGTCAGTGTA-TGGCTTCCAAATGGATAATAATGAGGATCTC 330 consensus_2186#1 CACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCA 353 * ** * * * * consensus_2186#0 AGTGCCACAGATGCCGACTGGGATGGAGAAAGA----GGAGGAATCGGAGCACCATCTCC 408 consensus_2186#2 AGT-CTGCAGACATCTG-TGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCC 388 consensus_2186#1 ACCAGTACAGACACCAG-GACCATTTGGATTTT----AAGGACTACAAAAAACCAGAGAA 408 * **** * * ** * **** consensus_2186#0 AGCGG--GCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCC 466 consensus_2186#2 AGCGG--GCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCC 446 consensus_2186#1 GACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAA-ACCCAAAATTCCCCCACTGT 467 *** ** ** ** * * * ***** **** * **** * * consensus_2186#0 TGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCT-ACCCCGGGGAGTTCA 525 consensus_2186#2 TGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCT-ACCCCGGGGAGTTCA 505 consensus_2186#1 CAGCACCTCAGCACTCAGGTCCCTC---TATTTTCAGTCTCAAGGACCTCAATCAGTATG 524 * * *** ** * ** ** * **** * *** * *** consensus_2186#0 AGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACT 585 consensus_2186#2 AGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACT 565 consensus_2186#1 ACTTTCCAAGCTCGG--ATGAAGAGCCTCTCTCCCAGATTC-ATTCAGGTTCTTCAGAGA 581 * * **** * ** * * * ** *** * ** *** **** consensus_2186#0 ACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCA 645 consensus_2186#2 ACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCA 625 consensus_2186#1 CAGA--GGAGGAGAATGACCCAGATGGCTGCTA--TGCTTTCAGGAGAAAGGCTGGCTGT 637 ** ** * * * *** * ** * * ** ***** * consensus_2186#0 CAGCACTGCAGTTTGAAGAAATGATAGACCGGC---TGGAGAAAGGCAGCGGAAAACAGC 702 consensus_2186#2 CAGCA------------------------------------------------------- 630 consensus_2186#1 CAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGAC 697 *** * consensus_2186#0 TCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAG 762 consensus_2186#2 ------------------------------------------------------------ consensus_2186#1 GGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGT 757 consensus_2186#0 TATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTG 822 consensus_2186#2 ------------------------------------------------------------ consensus_2186#1 TGCATAGGC-TTGGCACGGCGCCGCGTGGGC----------------------------- 787 consensus_2186#0 TCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT 866 consensus_2186#2 -------------------------------------------- consensus_2186#1 -------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |