|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence
[CCGCCATGTTGGCCATGGCGTATTGAACCGGGGAGGAACAGCGGAGCCTAGCAATTGAGATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGGACCTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGC--TTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCACAGCACTGCAGTTTGAAGAAATGATAGACCGGCTGGAGAAAGGCAGCGGAAAACAGCTCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAGTATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT]
[+] EMBL CA589732 [CCGCCATGTTGGCCATGGCGTATTGAACCGGGGAGGAACAGCGGAGCCTAGCAATTGAGATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGGACCTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGCTTTTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAAT ]
[+] EMBL CA588523 [ GGCTCTGTTCGCCCTGCTACGCCCTTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGC TTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCACAGCACTGCAGTTTGAAGAAATGATAGACCGGCTGGAGAAAGGCAGCGGAAAACAGCTCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAGTATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT]
consensusID : consensus_2186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence
[CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGGCCTTCCGTCGACGGACAGAGAAGATGCAGACGAGGAAGAATCGAAAGAATGACGAGGTGTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGAGATGATCAAGAGGAGGGAGAAGAGCAAGCGGGAGCTGCTCCATCTCACACTAGAGATCGTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGCAGAAGCACTCGCACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCAACCAGTACAGACACCAGGACCATTTGGATTTTAAGGACTACAAAAAACCAGAGAAGACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAAACCCAAAATTCCCCCACTGTCAGCACCTCAGCACTCAGGTCCCTCTATTTTCAGTCTCAAGGACCTCAATCAGTATGACTTTCCAAGCTCGGATGAAGAGCCTCTCTCCCAGATTCATTCAGGTTCTTCAGAGACAGAGGAGGAGAATGACCCAGATGGCTGCTATGCTTTCAGGAGAAAGGCTGGCTGTCAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGACGGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGTTGCATAGGCTTGGCACGGCGCCGCGTGGGC]
[+] EMBL CA588109 [CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGGCCTTCCGTCGACGGACAGAGAAGATGCAGACGAGGAAGAATCGAAAGAATGACGAGGTGTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGAGATGATCAAGAGGAGGGAGAAGAGCAAGCGGGAGCTGCTCCATCTCACACTAGAGATCGTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGCAGAAGCACTCGCACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCAACCAGTACAGACACCAGGACCATTTGGATTTTAAGGACTACAAAAAACCAGAGAAGACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAAACCCAAAATTCCCCCACTGTCAGCACCTCAGCACTCAGGTCCCTCTATTTTCAGTCTCAAGGACCTCAATCAGTATGACTTTCCAAGCTCGGATGAAGAGCCTCTCTCCCAGATTCATTCAGGTTCTTCAGAGACAGAGGAGGAGAATGACCCAGATGGCTGCTATGCTTTCAGGAGAAAGGCTGGCTGTCAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGACGGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGTTGCATAGGCTTGGCACGGCGCCGCGTGGGC]
consensusID : consensus_2186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAAGATCCGTGCCGACGACCTGTATCTGTCCCGCCGAGCTCTGCTTCCCAGCGACGCGTCTCTGTGGGTCGGACACACTTTTGGCGACAGAATAATTCCAAACGTTTTTTTTCCGCTTTTCCTCAGAGGAATCCCGAGGGCTGCTAAGTTAGCGTTAGCATGACAAACCCAAGCGCTGCCATCATCCTCCCTTGTGGCTTTCCTCACAACAGATCTCCATTATGGACTACAAATGTCAGTGTATGGCTTCCAAATGGATAATAATGAGGATCTCAGTCTGCAGACATCTGTGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCACAGCA]
[+] EMBL CA332750 [TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAAGATCCGTGCCGACGACCTGTATCTGTCCCGCCGAGCTCTGCTTCCCAGCGACGCGTCTCTGTGGGTCGGACACACTTTTGGCGACAGAATAATTCCAAACGTTTTTTTTCCGCTTTTCCTCAGAGGAATCCCGAGGGCTGCTAAGTTAGCGTTAGCATGACAAACCCAAGCGCTGCCATCATCCTCCCTTGTGGCTTTCCTCACAACAGATCTCCATTATGGACTACAAATGTCAGTGTATGGCTTCCAAATGGATAATAATGAGGATCTCAGTCTGCAGACATCTGTGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCACAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2186#0 CCGCCATGTTGGCCATGGCGTATTGAACCGG--GGAGGAACAGCGGAGCCTAGCAATTGA 58
consensus_2186#2 -TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAA 59
consensus_2186#1 -CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGG 59
* * ** * * * * ** * *
consensus_2186#0 GATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGG 118
consensus_2186#2 GAT-CCGTGCCG--ACGACCTGTATCTGT--CCCGCCGAGCTCTGCTT-CCCAGCGACGC 113
consensus_2186#1 CCTTCCGTCGACGGACAGAGAAGATGCAG--ACGAGGAAGAATCGAAAGAATGACGAGGT 117
* *** * * * * * * * *
consensus_2186#0 ACC---TAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTT-TCATCCATGA 174
consensus_2186#2 GTC---TCTGTGGGTCG------GACACACTTTTGGCGACAGAATAATT-CCAAACGTTT 163
consensus_2186#1 GTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGA 177
* * * ** * * * ** *
consensus_2186#0 GATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGAT-TTATGCTGCCGCTT 233
consensus_2186#2 TTTTTCCGCTTTTCCTCAGAGGAATCCCGAG---GGCTGCTAAGT-TAGCGTTAGCATGA 219
consensus_2186#1 GATGATCAAGAGGAGGGAGAAGAGCAAGCGG--GAGCTGCTCCATCTCACACTAGAGATC 235
* * * * * * *
consensus_2186#0 AATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTG 293
consensus_2186#2 CAAACCCAAGCGCTGCCATCATCCTCCCTTGTG---GCTTTCCTCAC-AACAGATCTC-- 273
consensus_2186#1 GTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGC-AGAAGCACTC-G 293
* * * * * * * * * * ***
consensus_2186#0 CCCGTCTTCCGCTGCGAGGATTTGCCTG-ACCTGCATGAATATGCCTCGATCAACCGAGC 352
consensus_2186#2 --CATTATGGACTACAAATGTCAGTGTA-TGGCTTCCAAATGGATAATAATGAGGATCTC 330
consensus_2186#1 CACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCA 353
* ** * * * *
consensus_2186#0 AGTGCCACAGATGCCGACTGGGATGGAGAAAGA----GGAGGAATCGGAGCACCATCTCC 408
consensus_2186#2 AGT-CTGCAGACATCTG-TGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCC 388
consensus_2186#1 ACCAGTACAGACACCAG-GACCATTTGGATTTT----AAGGACTACAAAAAACCAGAGAA 408
* **** * * ** * ****
consensus_2186#0 AGCGG--GCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCC 466
consensus_2186#2 AGCGG--GCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCC 446
consensus_2186#1 GACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAA-ACCCAAAATTCCCCCACTGT 467
*** ** ** ** * * * ***** **** * **** * *
consensus_2186#0 TGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCT-ACCCCGGGGAGTTCA 525
consensus_2186#2 TGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCT-ACCCCGGGGAGTTCA 505
consensus_2186#1 CAGCACCTCAGCACTCAGGTCCCTC---TATTTTCAGTCTCAAGGACCTCAATCAGTATG 524
* * *** ** * ** ** * **** * *** * ***
consensus_2186#0 AGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACT 585
consensus_2186#2 AGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACT 565
consensus_2186#1 ACTTTCCAAGCTCGG--ATGAAGAGCCTCTCTCCCAGATTC-ATTCAGGTTCTTCAGAGA 581
* * **** * ** * * * ** *** * ** *** ****
consensus_2186#0 ACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCA 645
consensus_2186#2 ACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCA 625
consensus_2186#1 CAGA--GGAGGAGAATGACCCAGATGGCTGCTA--TGCTTTCAGGAGAAAGGCTGGCTGT 637
** ** * * * *** * ** * * ** ***** *
consensus_2186#0 CAGCACTGCAGTTTGAAGAAATGATAGACCGGC---TGGAGAAAGGCAGCGGAAAACAGC 702
consensus_2186#2 CAGCA------------------------------------------------------- 630
consensus_2186#1 CAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGAC 697
*** *
consensus_2186#0 TCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAG 762
consensus_2186#2 ------------------------------------------------------------
consensus_2186#1 GGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGT 757
consensus_2186#0 TATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTG 822
consensus_2186#2 ------------------------------------------------------------
consensus_2186#1 TGCATAGGC-TTGGCACGGCGCCGCGTGGGC----------------------------- 787
consensus_2186#0 TCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT 866
consensus_2186#2 --------------------------------------------
consensus_2186#1 --------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |