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Takifugu rubripes
cluster # 2186 cluster # 2186       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2186#0 length = 866 sequences # 2  
consensus_2186#1 length = 787 sequences # 1  
consensus_2186#2 length = 630 sequences # 1  

consensusID : consensus_2186#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 866
fasta sequence
                              [CCGCCATGTTGGCCATGGCGTATTGAACCGGGGAGGAACAGCGGAGCCTAGCAATTGAGATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGGACCTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGC--TTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCACAGCACTGCAGTTTGAAGAAATGATAGACCGGCTGGAGAAAGGCAGCGGAAAACAGCTCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAGTATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT]

[+] EMBL CA589732             [CCGCCATGTTGGCCATGGCGTATTGAACCGGGGAGGAACAGCGGAGCCTAGCAATTGAGATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGGACCTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGCTTTTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAAT                                                                                                                                                                                                                                                      ]
[+] EMBL CA588523             [                                                                                                GGCTCTGTTCGCCCTGCTACGCCCTTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGC  TTAATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCTTCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCACAGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCACAGCACTGCAGTTTGAAGAAATGATAGACCGGCTGGAGAAAGGCAGCGGAAAACAGCTCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAGTATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT]


>consensus_2186#0 CCGCCATGTTGGCCATGGCGTATTGAACCGGGGAGGAACAGCGGAGCCTAGCAATTGAGA TACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGGAC CTAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTTTCATCCATGAGATCTC GGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGATTTATGCTGCCGCTTAATATAA AAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTGCCCGTCT TCCGCTGCGAGGATTTGCCTGACCTGCATGAATATGCCTCGATCAACCGAGCAGTGCCAC AGATGCCGACTGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCT CGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGG AGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGC TTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAG AGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCACAGCACTGCAGTTTG AAGAAATGATAGACCGGCTGGAGAAAGGCAGCGGAAAACAGCTCGTTAGTCTCCAGGAGG CCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAGTATTTGATTACTGGAGCC GCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTGTCAAACAGGAAAAAAGGG ATGGCTCAAGCACCAGCGACCCCTAT



consensusID : consensus_2186#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence
                              [CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGGCCTTCCGTCGACGGACAGAGAAGATGCAGACGAGGAAGAATCGAAAGAATGACGAGGTGTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGAGATGATCAAGAGGAGGGAGAAGAGCAAGCGGGAGCTGCTCCATCTCACACTAGAGATCGTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGCAGAAGCACTCGCACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCAACCAGTACAGACACCAGGACCATTTGGATTTTAAGGACTACAAAAAACCAGAGAAGACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAAACCCAAAATTCCCCCACTGTCAGCACCTCAGCACTCAGGTCCCTCTATTTTCAGTCTCAAGGACCTCAATCAGTATGACTTTCCAAGCTCGGATGAAGAGCCTCTCTCCCAGATTCATTCAGGTTCTTCAGAGACAGAGGAGGAGAATGACCCAGATGGCTGCTATGCTTTCAGGAGAAAGGCTGGCTGTCAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGACGGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGTTGCATAGGCTTGGCACGGCGCCGCGTGGGC]

[+] EMBL CA588109             [CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGGCCTTCCGTCGACGGACAGAGAAGATGCAGACGAGGAAGAATCGAAAGAATGACGAGGTGTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGAGATGATCAAGAGGAGGGAGAAGAGCAAGCGGGAGCTGCTCCATCTCACACTAGAGATCGTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGCAGAAGCACTCGCACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCAACCAGTACAGACACCAGGACCATTTGGATTTTAAGGACTACAAAAAACCAGAGAAGACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAAACCCAAAATTCCCCCACTGTCAGCACCTCAGCACTCAGGTCCCTCTATTTTCAGTCTCAAGGACCTCAATCAGTATGACTTTCCAAGCTCGGATGAAGAGCCTCTCTCCCAGATTCATTCAGGTTCTTCAGAGACAGAGGAGGAGAATGACCCAGATGGCTGCTATGCTTTCAGGAGAAAGGCTGGCTGTCAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGACGGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGTTGCATAGGCTTGGCACGGCGCCGCGTGGGC]


>consensus_2186#1 CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGGC CTTCCGTCGACGGACAGAGAAGATGCAGACGAGGAAGAATCGAAAGAATGACGAGGTGTC ATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGAGAT GATCAAGAGGAGGGAGAAGAGCAAGCGGGAGCTGCTCCATCTCACACTAGAGATCGTAGA GAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGCAGAAGCACTCGCACAGCG AGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCAACCAGTA CAGACACCAGGACCATTTGGATTTTAAGGACTACAAAAAACCAGAGAAGACGGAAGCAAT ACGAACAAAACGGAAATATGAAAAGAAACCCAAAATTCCCCCACTGTCAGCACCTCAGCA CTCAGGTCCCTCTATTTTCAGTCTCAAGGACCTCAATCAGTATGACTTTCCAAGCTCGGA TGAAGAGCCTCTCTCCCAGATTCATTCAGGTTCTTCAGAGACAGAGGAGGAGAATGACCC AGATGGCTGCTATGCTTTCAGGAGAAAGGCTGGCTGTCAGTACTACGCTTCACGCCAAGA CCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGACGGCGGACTCGGTGACGTGCGATT CCGGTACTGGCTGACATCCCTGAATGTACCACGACGTTGCATAGGCTTGGCACGGCGCCG CGTGGGC



consensusID : consensus_2186#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence
                              [TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAAGATCCGTGCCGACGACCTGTATCTGTCCCGCCGAGCTCTGCTTCCCAGCGACGCGTCTCTGTGGGTCGGACACACTTTTGGCGACAGAATAATTCCAAACGTTTTTTTTCCGCTTTTCCTCAGAGGAATCCCGAGGGCTGCTAAGTTAGCGTTAGCATGACAAACCCAAGCGCTGCCATCATCCTCCCTTGTGGCTTTCCTCACAACAGATCTCCATTATGGACTACAAATGTCAGTGTATGGCTTCCAAATGGATAATAATGAGGATCTCAGTCTGCAGACATCTGTGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCACAGCA]

[+] EMBL CA332750             [TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAAGATCCGTGCCGACGACCTGTATCTGTCCCGCCGAGCTCTGCTTCCCAGCGACGCGTCTCTGTGGGTCGGACACACTTTTGGCGACAGAATAATTCCAAACGTTTTTTTTCCGCTTTTCCTCAGAGGAATCCCGAGGGCTGCTAAGTTAGCGTTAGCATGACAAACCCAAGCGCTGCCATCATCCTCCCTTGTGGCTTTCCTCACAACAGATCTCCATTATGGACTACAAATGTCAGTGTATGGCTTCCAAATGGATAATAATGAGGATCTCAGTCTGCAGACATCTGTGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCACAGCA]


>consensus_2186#2 TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAAG ATCCGTGCCGACGACCTGTATCTGTCCCGCCGAGCTCTGCTTCCCAGCGACGCGTCTCTG TGGGTCGGACACACTTTTGGCGACAGAATAATTCCAAACGTTTTTTTTCCGCTTTTCCTC AGAGGAATCCCGAGGGCTGCTAAGTTAGCGTTAGCATGACAAACCCAAGCGCTGCCATCA TCCTCCCTTGTGGCTTTCCTCACAACAGATCTCCATTATGGACTACAAATGTCAGTGTAT GGCTTCCAAATGGATAATAATGAGGATCTCAGTCTGCAGACATCTGTGTCTTGAGGAATT CTCTCATCACTGCAGGAGCACCATCTCCAGCGGGCCATCTCGGCACAGCAGGTATATGGC GAGAAGAGGGAAAACATGGTTATTCCTGTCCCTGAAGCGGAGAGCAACATCACGTACTAC GAGTCGCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTC AGTCTGGATACAGAACTGCCAGACTACGACTTGAATTCAGAGGACGAGACGTTTGTGAAT AAGCTGGAGAAGAAAATGGAAATCACAGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2186#0      CCGCCATGTTGGCCATGGCGTATTGAACCGG--GGAGGAACAGCGGAGCCTAGCAATTGA 58
consensus_2186#2      -TGGTTCGGTGGTCACTTTGGATCTTTTCTGTCGAACTATCACCGGCGAACTTTGTGTAA 59
consensus_2186#1      -CCTCTTATTTGTCAAACAGGAAAAAAGGGATGGCTCAAGCACCCCCTACCCCTATGTGG 59
                               * * **    * *           *    * ** *             *  

consensus_2186#0      GATACCGAGATAGAGCGACTGAGACCCGGGGCCCGCCCGGCTCTGTTCGCCCTGCTACGG 118
consensus_2186#2      GAT-CCGTGCCG--ACGACCTGTATCTGT--CCCGCCGAGCTCTGCTT-CCCAGCGACGC 113
consensus_2186#1      CCTTCCGTCGACGGACAGAGAAGATGCAG--ACGAGGAAGAATCGAAAGAATGACGAGGT 117
                        * ***        *       *        *      *    *         * * * 

consensus_2186#0      ACC---TAGGCGTACCCTCAATCGACCGGCTGACTCCTACTGTACAGTT-TCATCCATGA 174
consensus_2186#2      GTC---TCTGTGGGTCG------GACACACTTTTGGCGACAGAATAATT-CCAAACGTTT 163
consensus_2186#1      GTCATATGAGAAGATGCTGAAGCTACGCAGAGACCTTAGCCGAGCTGTCACCATCCTGGA 177
                        *   *  *              **             * *     *   **  *    

consensus_2186#0      GATCTCGGGGCAGAACTGCTGTTATCCCTAGCAGATCGAATAGAT-TTATGCTGCCGCTT 233
consensus_2186#2      TTTTTCCGCTTTTCCTCAGAGGAATCCCGAG---GGCTGCTAAGT-TAGCGTTAGCATGA 219
consensus_2186#1      GATGATCAAGAGGAGGGAGAAGAGCAAGCGG--GAGCTGCTCCATCTCACACTAGAGATC 235
                        *                           *     *   *   * *     *       

consensus_2186#0      AATATAAAAATGAGTAAATTGTCGTTTCGGGCGCGGGCGCTGGATGCTAGTAAGCCTCTG 293
consensus_2186#2      CAAACCCAAGCGCTGCCATCATCCTCCCTTGTG---GCTTTCCTCAC-AACAGATCTC-- 273
consensus_2186#1      GTAGAGAAGAGGAATGCAATGCCAGACTACGGCAGTGAGGTGATCGC-AGAAGCACTC-G 293
                             *   *     *    *       *     *   *     * *  *   ***  

consensus_2186#0      CCCGTCTTCCGCTGCGAGGATTTGCCTG-ACCTGCATGAATATGCCTCGATCAACCGAGC 352
consensus_2186#2      --CATTATGGACTACAAATGTCAGTGTA-TGGCTTCCAAATGGATAATAATGAGGATCTC 330
consensus_2186#1      CACAGCGAGCGCTGGTGAAACCCGTCTACACCTTCCCCATCATTCCCCTGTCCTACAGCA 353
                        *        **          *  *           *           *         

consensus_2186#0      AGTGCCACAGATGCCGACTGGGATGGAGAAAGA----GGAGGAATCGGAGCACCATCTCC 408
consensus_2186#2      AGT-CTGCAGACATCTG-TGTCTTGAGGAATTCTCTCATCACTGCAGGAGCACCATCTCC 388
consensus_2186#1      ACCAGTACAGACACCAG-GACCATTTGGATTTT----AAGGACTACAAAAAACCAGAGAA 408
                      *      ****   *        *   **                   *  ****     

consensus_2186#0      AGCGG--GCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCC 466
consensus_2186#2      AGCGG--GCCATCTCGGCACAGCAGGTATATGGCGAGAAGAGGGAAAACATGGTTATTCC 446
consensus_2186#1      GACGGAAGCAATACGAACAAAACGGAAATATGAAAAGAA-ACCCAAAATTCCCCCACTGT 467
                        ***  ** **     ** * * *  *****   **** *   ****       * *  

consensus_2186#0      TGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCT-ACCCCGGGGAGTTCA 525
consensus_2186#2      TGTCCCTGAAGCGGAGAGCAACATCACGTACTACGAGTCGCTCT-ACCCCGGGGAGTTCA 505
consensus_2186#1      CAGCACCTCAGCACTCAGGTCCCTC---TATTTTCAGTCTCAAGGACCTCAATCAGTATG 524
                         * *   ***    **   * **   ** *   **** *    *** *    ***   

consensus_2186#0      AGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACT 585
consensus_2186#2      AGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTCTGGATACAGAACTGCCAGACT 565
consensus_2186#1      ACTTTCCAAGCTCGG--ATGAAGAGCCTCTCTCCCAGATTC-ATTCAGGTTCTTCAGAGA 581
                      *  * ****    *   **  * *  *   **  ***  *  ** ***      ****  

consensus_2186#0      ACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATCA 645
consensus_2186#2      ACGACTTGAATTCAGAGGACGAGACGTTTGTGAATAAGCTGGAGAAGAAAATGGAAATCA 625
consensus_2186#1      CAGA--GGAGGAGAATGACCCAGATGGCTGCTA--TGCTTTCAGGAGAAAGGCTGGCTGT 637
                        **   **    *  *  * *** *  **  *      *  ** *****       *  

consensus_2186#0      CAGCACTGCAGTTTGAAGAAATGATAGACCGGC---TGGAGAAAGGCAGCGGAAAACAGC 702
consensus_2186#2      CAGCA------------------------------------------------------- 630
consensus_2186#1      CAGTACTACGCTTCACGCCAAGACCAGAGTGGCAACTGGCCATGGATGGCGCCGTCAGAC 697
                      *** *                                                       

consensus_2186#0      TCGTTAGTCTCCAGGAGGCCAAGCTGCTCCTGAAGGAGGATGATGAGCTGATCAAGGAAG 762
consensus_2186#2      ------------------------------------------------------------
consensus_2186#1      GGCGGACTCGGTGACGTGCGATTCCGGTACTGGCTGACATCCCTGAATGTACCACGACGT 757
                                                                                  

consensus_2186#0      TATTTGATTACTGGAGCCGCAAAAGGAAAATCTTCAAAAGTAGCCTCCTCATCCCAGTTG 822
consensus_2186#2      ------------------------------------------------------------
consensus_2186#1      TGCATAGGC-TTGGCACGGCGCCGCGTGGGC----------------------------- 787
                                                                                  

consensus_2186#0      TCAAACAGGAAAAAAGGGATGGCTCAAGCACCAGCGACCCCTAT 866
consensus_2186#2      --------------------------------------------
consensus_2186#1      --------------------------------------------
                                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)