These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [GTCCCTAGCTAGTCGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGCCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGTCAGGGGATGAAACGGGGCTGGTTCACATACACGGATCTCTGCGTACTGCTGGAGCAGTCGGCATGGAGTCAAGCTCTTGCAGCCATCTACCAGCACTTTACTAAGATTTCTTGCATGCTCGGACTCCTCTACCTGACCAGCGTGGCGGGCCTCATCGCCACCTGTGCTGTGCTGCAGCAGCTCAGTATTTCCAGATACAGCCAGACCGAGCTGTCACCTCCAGCTGAC] [+] EMBL CA845917 [GTCCCTAGCTAGTCGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGCCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGTCAGGGGATGAAACGGGGCTGGTTCACATACACGGATCTCTGCGTACTGCTGGAGCAGTCGGCATGGAGTCAAGCTCTTGCAGCCATCTACCAGCACTTTACTAAGATTTCTTGCATGCTCGGACTCCTCTACCTGACCAGCGTGGCGGGCCTCATCGCCACCTGTGCTGTGCTGCAGCAGCTCAGTATTTCCAGATACAGCCAGACCGAGCTGTCACCTCCAGCTGAC] [+] EMBL CA332977 [ GAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGCCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGTCAGGGGATGAAACGGGGCTGGTTC ] consensusID : consensus_2193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [CTGTGCTAGTAGCGAGCTAGTTGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGAGAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTGACTTTAGATTCCTTATCTTGCCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACCAAGCCCAATCCGAAGGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGNCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTTCTTGAATTA] [+] EMBL BU808271 [CTGTGCTAGTAGCGAGCTAGTTGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGAGAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTGACTTTAGATTCCTTATCTTGTCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACCAAGCCCAATCCGAAAGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGNCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTTCTTGAATTA] [+] EMBL CA332726 [ TTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGAGAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTGACTTTAGATTCCTTATCTTGCCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACCAAGCCCAATCCGAAGGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2193#0 --------GTCCCTAGCTAGTCGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATT 52 consensus_2193#1 CTGTGCTAGTAGCGAGCTAGTTGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATT 60 ** * ******* ************************************** consensus_2193#0 CGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAG 112 consensus_2193#1 CGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAG 120 ************************************************************ consensus_2193#0 ACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGG-CCTGCATCTCTCCCTGTGCCA 171 consensus_2193#1 ACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGA 180 ********************************* **** * * * * consensus_2193#0 TGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAA 231 consensus_2193#1 GAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTG------ACTTT---- 230 * ** * * * * *** ******** ** ** consensus_2193#0 AGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATG 291 consensus_2193#1 AGATTCCTTATCTTGCCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACC 290 **** * * * *** ** * *** * ** ** *** ** * consensus_2193#0 ATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCG-GCCGGAAAGCTGGAT 350 consensus_2193#1 A-----AGCCCAATCCGAAGGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCC 345 * * * * *** ** * *** *** * * * * * * ** consensus_2193#0 GTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTC 410 consensus_2193#1 TGCATCTCTCCCTGTGCCATGATGCTGG---CTCTGGTTTACATCGAAAGGCTCCGACAC 402 ** ** * * * ** * ** ** *** *** ** ** * consensus_2193#0 ACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGT 470 consensus_2193#1 AGAAACCCTGAATACCTTCAAAAGAT-----CTCCTCCTCAGACC--TTTTCCTGATCTC 455 * * ***** * **** * * * ** * ** ** ** * ** * consensus_2193#0 CAGGGGATGAAACGGGGCTGGTTCACATACACGGATCTCTGCGTACTGCTGGAGCAGTCG 530 consensus_2193#1 CATG--ATG----GTTGCTAG--CAAGTACTTGTAT---GATGAAGGGGAGGAAGAGGAG 504 ** * *** * *** * ** *** * ** * * * *** ** * consensus_2193#0 GCATGGAGTCAAGCTCTTGCAGCCATCTACCAGCACTTTACTAAGATTTCTTGCATGCTC 590 consensus_2193#1 GTTTTCAATGACGAATGGGGAGCGGNCGGAAAGCTGGATGTCAAAACTGTCAATAACCTG 564 * * * * * * * *** * *** * ** * * * ** consensus_2193#0 GGACTCCTCTACCTGACCAGCGTGGC---GGGCCTCATCGCCACCTGTGCTGTGCTGCAG 647 consensus_2193#1 GAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTTCTT 624 * * ** * *** * * * * * ***** ** * * * ** ** * consensus_2193#0 CAGCTCAGTATTTCCAGATACAGCCAGACCGAGCTGTCACCTCCAGCTGAC 698 consensus_2193#1 GAATTA--------------------------------------------- 630 * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |