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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1817 fasta sequence
[CTTACAGCTGCACCGGTTTAGAGAAGCTTTCCTGAGAGGTGGCACATAATAAGCAGTGAAAACCGACTTTTTCCTCCCGCGGAGATGCCTGAGGACGTTGGAACAGCCAAAGCTGGAGGGGTCATTGCCTATATTTCCTCTGGCTCCACTTCCATCCCAGAGTCCTGTAGGAGCGGTAGCCCCAACAGCAGCTACTTGTCCACATCACCATCGCTGTCCCGCCCCGCGCTGCCCAGCAGAGCCATCGGGATGGTGGTGGACATCTCTCCCCCTACCAAAAGTTCCCAACAGCGCAGTCATGGCGTGGAGAAGCCAGGACGTTCCTCATCATCCAGCAAGACCTGCGTTACCAAGATTAATGGTATGGTGCTGCTCTGCAAGGTGTGTGGGGACGTGGCCTCTGGCTTCCATTACGGCGTCCATGCCTGTGAGGGCTGCAAGGGTTTTTTCCGAAGGAGCATCCAGCAGAACATCCAGTATAAAAAGTGTCTTAAAATGGAGAACTGCACCATCGTCAGGATCAACAGAAACCGCTGTCAGCAGTGTCGCTTCAAGAAGTGCCTCGCTGTCGGCATGTCCAGAGACGCTGTCCGATTTGGTCGAATCCCAAAGAGGGAGAAGCAGAGGATGCTGCTAGAAATGCAGAACGCCATGAACAACATGATGAGCAACAACAGTCAGCTGCACACAATGCTGCACAGCCACCAGAGCCCCTCGCCGCCGATGGAGGCCAGCGATGCCAGCTCTGCACCATCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTTCTCTGCTTCTGATTCTTCATCCTGCTCCAGCCCCTCCTCCCCACAATGTCCCCAAGACTCTGAGTCTGTCATTTCAATGGACACGAACTCCAGCTCGGCCTCTTCTTGCGCGTCGGACAGTGGTGAAGATGAGGCCGTTGTCACAGGAAGTGGACAGCGTCAAAATGCCTTCGCCTACCGCCAGCAGAGCCAGGCCTCGTATTCCCTGGTCACCGTGCCGACTGAGGCGGGATGCATGGAGGTGCCAGCAGAGCAGGAGAACTGGAACTGCTGGAACAAGAACACCGGTGTGGAAGCCTACCAGTACAGGTCGCACAGCCCACACGTCAGCAACGCTGCCTACAGGGAGGAGCGTGGAGACTACCAGCAGCAGTGCCACAGCGCCCCCAGCAGGAAGCCTGCAGAAGATGCAACATCGTGGCGCGAATTCAAGAGGCTCCCGAGCTGCAGGGGTCCTCAGGAACCCAACAGCTGTCTGCACAACAGGACACGCCTGGTCTGTCCCATGAACACGTCGCCATACGTGGGGCCCAACAAGTCGAGTCAGGAGATCTGGGAGGAGTTTTCCATGAGCTTCACCCCGGCGGTGCAGGAGGTGGTGGACTTTGCCAAAAGGATTCCGGGCTTCCGGGATCTCCCCAAGAATGACCAAGTGAGCCTGCTGAAGGCTGGAACATTCGAGGTGCTAATGGTCCGATTCGCCTCCCTCTTCAATGCGGCCGAGCGTACCGTGACCTTCCTGAGTGGAAAGCGTTACAGCCTCGACACGCTGTGCTCGCTGGGCGCCGGCGAGCTGCTCCTCTCCATGTGTGAGTTCAGCGAGAAGCTGGCAGCCCTGCGGCTGGACTCTGACGAGATGAGCCTCTTCGCCGCCGTGGTGCTCGTCTCAGCCGATCGCTCAGGCATCCAGGACCTGAACGCCGTGGAGGCTCTGCAGGACCAGCTGATCCGGGCGCTGCGGAACCTGATCGGCGAAAAGCACGGCGACGAGTCGGCCACCACCTTCACCAAGCTGCTGCTCAAGCT]
[+] EMBL BU805013 [CTTACAGCTGCACCGGTTTAGAGAAGCTTTCCTGAGAGGTGGCACATAATAAGCAGTGAAAACCGACTTTTTCCTCCCGCGGAGATGCCTGAAGACGTTGGAACAGCCAAAGCTGGAGGGGTCATTGCCTATATTTCCTCTGGCTCCACTTCCATCCCAGAGTCCTGTAGGAGCGGTAGCCCCAACAGCAGCTACTTGTCCACATCACCATCGCTGTCCCGCCCCGCGCTGCCCAGCAGAGCCATCGGGATGGTGGTGGACATCTCTCCCCCTACCAAAAGTTCCCAACAGCGCAGTCATGGCGTGGAGAAGCCAGGACGTTCCTCATCATCCAGCAAGACCTGCGTTACCAAGATTAATGGTATGGTGCTGCTCTGCAAGGTGTGTGGGGACGTGGCCTCTGGCTTCCATTACGGCGTCCATGCCTGTGAGGGCTGCAAGGGTTTTTTCCGAAGGAGCATCCAGCAGAACATCCAGTATAAAAAGTGTCTTAAAATGGAGAACTGCACCATCGTCAGGATCAACAGAAACCGCTGTCAGCAGTGTCGCTTCAAGAAGTGCCTCGCTGTCGGCATGTCCAGAGACGCTGTCCGATTTGGTCGAATCCCCAAGAGGGAGAAGCAG ]
[+] EMBL FR0059736 [ AGCAGTGAAAACTGACTTTTTCCTCCCGCGGAGATGCCTGAGGACGTTGGAACAGCCAAAGCTGGAGGGGTCATTGCCTATATTTCCTCTGGCTCCACTTCCATCCCAGAGTCCTGTAGGAGCGGTAGCCCCAACAGCAGCTACTTGTCCACATCACCATCGCTGTCCCGCCCCGCGCTGCCCAGCAGAGCCATCGGGATGGTGGTGGACATCTCTCCCCCTACCAAAAGTTCCCAACAGCGCAGTCATGGCGTGGAGAAGCCAGGACGTTCCTCATCATCCAGCAA ]
[+] EMBL AF342948 [ CCATTACGGCGTCCATGCCTGTGAGGGCTGCAAGGTTTTTTTCCGAAGGAGCATCCAGCAGAACATCCAGTATAAAAAGTGTCTTAAAATGGAGAACTGCACCATCGTCAGGATCAACAGAAACCGCTGTCAGCAGTGTCGCTTCAAGAAGTGCCTCGCTGTCGGCATGTCCAGAGACGCTGTCCGATTTGGTCGAATCCCAAAGAAGGAGAAGCAGAGGATGCTGCTAGAAATGCAGAACGCCATGAACAACATGATGAGCAACAACAGTCAGCTGCACACAATGCTGCACAGCCACCAGAGCCCCTCGCCGCCGATGGAGGCCAGCGATGCCAGCTCTGCACCATCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTTCTCTGCTTCTGATTCTTCATCCTGCTCCAGCCCCTCCTCCCCACAATGTCCCCAAGACTCTGAGTCTGTCATTTCAATGGACACGAACTCCAGCTCGGCCTCTTCTTGCGCGTCGGACAGTGGTGAAGATGAGGCCGTTGTCACAGGAAGTGGACAGCGTCAAAATGCCTTCGCCTACCGCCAGCAGAGCCAGGCCTCGTATTCCCTGGTCACCGTGCCGACTGAGGCGGGATGCATGGAGGTGCCAGCAGAGCAGGAGAACTGGAACTGCTGGAACAAGAACACCGGTGTGGAAGCCTACCAGTACAGGTCGCACAGCCCACACGTCAGCAACGCTGCCTACAGGGAGGAGCGTGGAGACTACCAGCAGCAGTGCCACAGCGCCCCCAGCAGGAAGCCTGCAGAAGATGCAACATCGTGGCGCGAATTCAAGAGGCTCCCGAGCTGCAGGGGTCCTCAGGAACCCAACAGCTGTCTGCACAACAGGACACGCCTGGTCTGTCCCATGAACACGTCGCCATACGTGGGGCCCAACAAGTCGAGTCAGGAGATCTGGGAGGAGTTTTCCATGAGCTTCACCCCGGCGGTGCAGGAGGTGGTGGACTTTGCCAAAAGGATTCCGGGCTTCCGGGATCTCCCCAAGAATGACCAAGTGAGCCTGCTGAAGGCTGGAACATTCGAGGTGCTAATGGTCCGATTCGCCTCCCTCTTCAATGCGGCCGAGCGTACCGTGACCTTCCTGAGTGGAAAGCGTTACAGCCTCGACACGCTGTGCTCGCTGGGCGCCGGCGAGCTGCTCCTCTCCATGTGTGAGTTCAGCGAGAAGCTGGCAGCCCTGCGGCTGGACTCTGACGAGATGAGCCTCTTCGCCGCCGTGGTGCTCGTCTCAGCCGATCGCTCAGGCATCCAGGACCTGAACGCCGTGGAGGCTCTGCAGGACCAGCTGATCCGGGCGCTGCGGAACCTGATCGGCGAAAAGCACGGCGACGAGTCGGCCACCACCTTCACCAAGCTGCTGCTCAAGCT]
consensusID : consensus_2194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence
[CGAGGGGGCNTAAGACTTTGGACATCCAAACTGTAGTGTCATTGCCTATATTTCCTCTGGCTCCACTTCCATCCCAGAGTCCTGTAGGAGCGGTACCCCCAACAGCAGCTACTTGTCCACATCACCATCGCTGGCCCGCCCCGCGCTGCCCAGCAAGAGCCATCGGGATGGGGGGTGGACATCTTTCCCCCTACCAGAAGGTCCCAACAGCGTAGGCATGGCGGGGGGGAAGCCAGGACGGTCCTCA]
[+] EMBL FR0058990 [CGAGGGGGCNTAAGACTTTGGACATCCAAACTGTAGTGTCATTGCCTATATTTCCTCTGGCTCCACTTCCATCCCAGAGTCCTGTAGGAGCGGTACCCCCAACAGCAGCTACTTGTCCACATCACCATCGCTGGCCCGCCCCGCGCTGCCCAGCAAGAGCCATCGGGATGGGGGGTGGACATCTTTCCCCCTACCAGAAGGTCCCAACAGCGTAGGCATGGCGGGGGGGAAGCCAGGACGGTCCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2194#0 CTTACAGCTGCACCGGTTTAGAGAAGCTTTCCTGAGAGGTGGCACATAATAAGCAGTGAA 60
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 AACCGACTTTTTCCTCCCGCGGAGATGCCTGAGGACGTTGGAACAGCCAAAGCTGGAGGG 120
consensus_2194#1 -------------------CGAGGGGGCNT-AAGACTTTGGA-CATCCAAA-CTGTAGTG 38
** * ** * * *** ***** ** ***** *** ** *
consensus_2194#0 GTCATTGCCTATATTTCCTCTGGCTCCACTTCCATCCCAGAGTCCTGTAGGAGCGGTAGC 180
consensus_2194#1 -TCATTGCCTATATTTCCTCTGGCTCCACTTCCATCCCAGAGTCCTGTAGGAGCGGTACC 97
********************************************************* *
consensus_2194#0 CCCAACAGCAGCTACTTGTCCACATCACCATCGCTGTCCCGCCCCGCGCTGCCCAGCA-G 239
consensus_2194#1 CCCAACAGCAGCTACTTGTCCACATCACCATCGCTGGCCCGCCCCGCGCTGCCCAGCAAG 157
************************************ ********************* *
consensus_2194#0 AGCCATCGGGATGGTGG-TGGACATCTCTCCCCCTACCAAAAGTTCCCAACAGCGCAGTC 298
consensus_2194#1 AGCCATCGGGATGGGGGGTGGACATCTTTCCCCCTACCAGAAGGTCCCAACAGCGTAGGC 217
************** ** ********* *********** *** *********** ** *
consensus_2194#0 ATGGCGTGGAG-AAGCCAGGACGTTCCTCATCATCCAGCAAGACCTGCGTTACCAAGATT 357
consensus_2194#1 ATGGCGGGGGGGAAGCCAGGACGGTCCTCA------------------------------ 247
****** ** * *********** ******
consensus_2194#0 AATGGTATGGTGCTGCTCTGCAAGGTGTGTGGGGACGTGGCCTCTGGCTTCCATTACGGC 417
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GTCCATGCCTGTGAGGGCTGCAAGGGTTTTTTCCGAAGGAGCATCCAGCAGAACATCCAG 477
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 TATAAAAAGTGTCTTAAAATGGAGAACTGCACCATCGTCAGGATCAACAGAAACCGCTGT 537
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 CAGCAGTGTCGCTTCAAGAAGTGCCTCGCTGTCGGCATGTCCAGAGACGCTGTCCGATTT 597
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GGTCGAATCCCAAAGAGGGAGAAGCAGAGGATGCTGCTAGAAATGCAGAACGCCATGAAC 657
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 AACATGATGAGCAACAACAGTCAGCTGCACACAATGCTGCACAGCCACCAGAGCCCCTCG 717
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 CCGCCGATGGAGGCCAGCGATGCCAGCTCTGCACCATCCTCCTCCTCCTCCTCCTCCTCC 777
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 TCTTCCTCCTCCTTCTCTGCTTCTGATTCTTCATCCTGCTCCAGCCCCTCCTCCCCACAA 837
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 TGTCCCCAAGACTCTGAGTCTGTCATTTCAATGGACACGAACTCCAGCTCGGCCTCTTCT 897
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 TGCGCGTCGGACAGTGGTGAAGATGAGGCCGTTGTCACAGGAAGTGGACAGCGTCAAAAT 957
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GCCTTCGCCTACCGCCAGCAGAGCCAGGCCTCGTATTCCCTGGTCACCGTGCCGACTGAG 1017
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GCGGGATGCATGGAGGTGCCAGCAGAGCAGGAGAACTGGAACTGCTGGAACAAGAACACC 1077
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GGTGTGGAAGCCTACCAGTACAGGTCGCACAGCCCACACGTCAGCAACGCTGCCTACAGG 1137
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GAGGAGCGTGGAGACTACCAGCAGCAGTGCCACAGCGCCCCCAGCAGGAAGCCTGCAGAA 1197
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GATGCAACATCGTGGCGCGAATTCAAGAGGCTCCCGAGCTGCAGGGGTCCTCAGGAACCC 1257
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 AACAGCTGTCTGCACAACAGGACACGCCTGGTCTGTCCCATGAACACGTCGCCATACGTG 1317
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GGGCCCAACAAGTCGAGTCAGGAGATCTGGGAGGAGTTTTCCATGAGCTTCACCCCGGCG 1377
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GTGCAGGAGGTGGTGGACTTTGCCAAAAGGATTCCGGGCTTCCGGGATCTCCCCAAGAAT 1437
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 GACCAAGTGAGCCTGCTGAAGGCTGGAACATTCGAGGTGCTAATGGTCCGATTCGCCTCC 1497
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 CTCTTCAATGCGGCCGAGCGTACCGTGACCTTCCTGAGTGGAAAGCGTTACAGCCTCGAC 1557
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 ACGCTGTGCTCGCTGGGCGCCGGCGAGCTGCTCCTCTCCATGTGTGAGTTCAGCGAGAAG 1617
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 CTGGCAGCCCTGCGGCTGGACTCTGACGAGATGAGCCTCTTCGCCGCCGTGGTGCTCGTC 1677
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 TCAGCCGATCGCTCAGGCATCCAGGACCTGAACGCCGTGGAGGCTCTGCAGGACCAGCTG 1737
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 ATCCGGGCGCTGCGGAACCTGATCGGCGAAAAGCACGGCGACGAGTCGGCCACCACCTTC 1797
consensus_2194#1 ------------------------------------------------------------
consensus_2194#0 ACCAAGCTGCTGCTCAAGCT 1817
consensus_2194#1 --------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |