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Takifugu rubripes
cluster # 2198 cluster # 2198       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2198#0 length = 546 sequences # 3  
consensus_2198#1 length = 414 sequences # 1  

consensusID : consensus_2198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 546
fasta sequence
                              [AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGCGGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGTTGTGGAAAGTTCCATAAGATTGTCCTACGCTTACAAAAGATGGTCAAA]

[+] EMBL CA331817             [AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTG                                                                                                                                     ]
[+] EMBL CA332151             [                                  AGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGT GGGGAGCGGTTCCTG                                                                                                                      ]
[-] EMBL BU808186             [                                                                                     GAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGCATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGCGGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGTTGTGGAAAGTTCCATAAGATTGTCCTACGCTTACAAAAGATGGTCAAA]


>consensus_2198#0 AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTC ACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTT GAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAA AAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAA CTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCT GCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCA TGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGC GGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTG GAGTTTGGCTAAAAATGTTGTGGAAAGTTCCATAAGATTGTCCTACGCTTACAAAAGATG GTCAAA



consensusID : consensus_2198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence
                              [AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGAGCGGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGAGGCTGATTCGAAAGAGCCGCTGAAAAT]

[-] EMBL CA588892             [AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGAGCGGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGAGGCTGATTCGAAAGAGCCGCTGAAAAT]


>consensus_2198#1 AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAAT GTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACA ATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATATGCAGAGCTTTGG CTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACAT ATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGAGCGGTTCCTGAGAGC GTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAA AATGATATGTTCCAAAGTTCTACCTGAGGCTGATTCGAAAGAGCCGCTGAAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2198#0      AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTC 60
consensus_2198#1      ------------------------------------------------------------
                                                                                  

consensus_2198#0      ACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTT 120
consensus_2198#1      ------------------------------------------------------------
                                                                                  

consensus_2198#0      GAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAA 180
consensus_2198#1      ------------AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAA 48
                                  ************* **********************************

consensus_2198#0      AAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAA 240
consensus_2198#1      AAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAA 108
                      ************************************************************

consensus_2198#0      CTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCT 300
consensus_2198#1      CTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATAT 168
                      ******************************************************** * *

consensus_2198#0      GCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCA 360
consensus_2198#1      GCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCA 228
                      ************************************************************

consensus_2198#0      TGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGC 420
consensus_2198#1      TGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGG-AGC 287
                      ******************************************************** ***

consensus_2198#0      GGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTG 480
consensus_2198#1      GGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTG 347
                      ** *********************************************************

consensus_2198#0      GAGTTTGGCTAAAAATGTTGTGG---AAAGTTCCATAAGATTGTCCTACGCTTACAAAAG 537
consensus_2198#1      GAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGA--GGCTGAT--TCGAAAGAG 403
                      ***************** * **    ******* *   **  * *  *   *   ** **

consensus_2198#0      ATGGTCAAA-- 546
consensus_2198#1      CCGCTGAAAAT 414
                        * * ***  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)