These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 546 fasta sequence [AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGCGGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGTTGTGGAAAGTTCCATAAGATTGTCCTACGCTTACAAAAGATGGTCAAA] [+] EMBL CA331817 [AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTG ] [+] EMBL CA332151 [ AGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGT GGGGAGCGGTTCCTG ] [-] EMBL BU808186 [ GAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGCATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGCGGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGTTGTGGAAAGTTCCATAAGATTGTCCTACGCTTACAAAAGATGGTCAAA] consensusID : consensus_2198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGAGCGGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGAGGCTGATTCGAAAGAGCCGCTGAAAAT] [-] EMBL CA588892 [AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGAGCGGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGAGGCTGATTCGAAAGAGCCGCTGAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2198#0 AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTC 60 consensus_2198#1 ------------------------------------------------------------ consensus_2198#0 ACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTT 120 consensus_2198#1 ------------------------------------------------------------ consensus_2198#0 GAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAA 180 consensus_2198#1 ------------AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAA 48 ************* ********************************** consensus_2198#0 AAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAA 240 consensus_2198#1 AAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAA 108 ************************************************************ consensus_2198#0 CTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCT 300 consensus_2198#1 CTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATAT 168 ******************************************************** * * consensus_2198#0 GCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCA 360 consensus_2198#1 GCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCA 228 ************************************************************ consensus_2198#0 TGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGC 420 consensus_2198#1 TGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGG-AGC 287 ******************************************************** *** consensus_2198#0 GGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTG 480 consensus_2198#1 GGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTG 347 ** ********************************************************* consensus_2198#0 GAGTTTGGCTAAAAATGTTGTGG---AAAGTTCCATAAGATTGTCCTACGCTTACAAAAG 537 consensus_2198#1 GAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGA--GGCTGAT--TCGAAAGAG 403 ***************** * ** ******* * ** * * * * ** ** consensus_2198#0 ATGGTCAAA-- 546 consensus_2198#1 CCGCTGAAAAT 414 * * *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |