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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence
[AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGCATAGCCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGTTATGCCTTCTTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAACACTCAGAGGGCCAGCACTAACCACAGCGGCTCGTTGGGGACCGCACACAACAGCCCCGAGCGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGGATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCCAGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACACTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGGTTGGAAAGAATGGAGAAG]
[+] EMBL CA591328 [AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGCATAGTCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGTCTGGCATTGCTCTCCTGTTATGCCTTCTTTGTGGTCTACAGTTTGAGGGTTAACCTTAGCGTTGCCATGGCGGAAATGCTTAACAACACTCAGAAGTCCAGCACTAACCACAGCGGCTCGTTGTGTCCTGCACACAACAGCCCCGAGCGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGGATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCCAGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACACTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGGTTGGAAAGAATGGAGAAG]
[+] EMBL FR0058817 [ CCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGTTATGCCTTCTTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAACACTCAGAGGGCCAGCACTAACCACAGCGGCTTGTTGGGGACCt ]
consensusID : consensus_2200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 338 fasta sequence
[CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGGGGAAATAGGGCACGTATGCTTACACACCAACGGAATTATCACCCTTTGCCC]
[+] EMBL FR0059132 [CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGTGTAAATAGGGCACGTATGCTTACACACCAACGGAATTATCACCCTTTGCCC]
[+] EMBL FR0059109 [ ATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGGGGAAATAGTGCACGTATGCTTACACACCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2200#0 AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGC 60
consensus_2200#1 ------------------------------------------------------------
consensus_2200#0 ATAGCCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAG 120
consensus_2200#1 --------CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAG 52
************************************************ ***
consensus_2200#0 ACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACA 180
consensus_2200#1 ACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACA 112
************************************************************
consensus_2200#0 AAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGT-TATGCCTTC 239
consensus_2200#1 AA--GGTGATTTATTAAAATT---AAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAG 167
** ** *** * * * ** * * * * * * * * * *
consensus_2200#0 TTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAAC 299
consensus_2200#1 CTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGAT-TAGACAAAATG--TATTCAT 224
* *** * * * * ** * * * *** * * ***** ** *
consensus_2200#0 ACTCAGAGGGCCAGCACTAACCACAGCGGCTCGTTGGGGACCGCACACAACAGCCCCGAG 359
consensus_2200#1 GGTTTGAAGACAAGCA-----------AGCTGGTTTAGCTACGTACAAAACTTCATTTCT 273
* ** * * **** *** *** * ** *** *** *
consensus_2200#0 CGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGG 419
consensus_2200#1 TGGGGGAGGTTAGGGGAAATAG--GGCACGTATG-CTTACACACCAA----CGGAATTAT 326
** * *** ** *** *** * ** ** * * * * **
consensus_2200#0 ATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCC 479
consensus_2200#1 CACCCTT-TGCCC----------------------------------------------- 338
* ****
consensus_2200#0 AGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACA 539
consensus_2200#1 ------------------------------------------------------------
consensus_2200#0 CTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGG 599
consensus_2200#1 ------------------------------------------------------------
consensus_2200#0 TTGGAAAGAATGGAGAAG 617
consensus_2200#1 ------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |