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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence
[CGGACGACTTGCAGTCATGGTGCTCGACTTGGACCTGTTTCGTACCGACAAGGGAGGCGATCCGGAGATTGTCCGCGAATGTCAAGGGAAGAGGTTTAAAGATGTGACGCTGGTCGACAAATTGGTCGCTGCCGATACGGAATGGAGGAAATGCCGCTTCACTGCAGACAACCTCAACAAAGTCAAGAACCTCTGCAGCAAGAGCATCGGGGAGAAAATGAAGAAGAAGGAACCGGTTGGAGAGGATGAAACTCTGCCTGAAGAAGCGCAGGACCTGGAATCCGTAACAGCTGAAACGTTAGCGACCCTGACAGTAGCCCAGATTAAGAAAGTGCGGCTGCTGGTGGACGAGGCCATTGGGAAAACTGACAGTGAAAGGGTGACACTGGAGGAAGAGCGATTCGAGCACCTCCGGGAGATCGGGAACCTTCTGCACCCGTCTGTCCCCATCA]
[+] EMBL BU808118 [CGGACGACTTGCAGTCATGGTGCTCGACTTGGACCTGTTTCGTACCGACAAGGGAGGCGATCCGGAGATTGTCCGCGAATGTCAAAGGAAGAGGTTTAAAGATGTGACGCTGGTCGACAAATTGGTCGCTGCCGATACGGAATGGAGGAAATGCCGCTTCACTGCAGACAACCTCAACAAAGTCAAGAACCTCTGCAGCAAGAGCATCGGGGAGAAAATGAAGAAGAAGGAACCGGTTGGAGAGGATGAAACTCTGCCTGAAGAAGCGCAGGACCTGGAATCCGTAACAGCTGAAACGTTAGCGACCCTGACAGTAGCCCAGATTAAGAAAGTGCGGCTGCTGGTGGACGAGGCCATTGGGAAAACTGACAGTGAAAGGGTGACACTGGAGGAAGAGCGATTCGAGCACCTCCGGGAGATCGGGAACCTTCTGCACCCGTCTGTCCCCATCA]
[+] EMBL FR0061492 [ GACTTGCAGTCATGGTGCTCGACTTGGACCTGTTTCGTACCGTCAAGGGAGGCGATCCGGAGATTGTCCGCGAATGTCAAGGGAAGAGGTTTAAAGATGTGACGCTGGTCGACAAATTGGTCGCTGCCGATACGGAATGGAGGAAATGCCGCTTCACTGCAGACAACCTCAACAAAGTCAAGAACCTCTGCAGCAAGAGCATCGGGGAGAAAATGAAGAAGAAGGAACCGGTTGGAGAGGATGAAACTCTGCCTGAAGAAGCGCAGGACCTGGAATCCGTAACAGCTGAAACGTTAGCGACCCTGA ]
consensusID : consensus_2203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[GATTCGAGCACCTCCGGGAGATCGGGAACCTTCTGCACCCGTCTGTCCCCATCAGCAACGACGAGGATGCAGACAACAAGGTAGAGCGGACCTGGGGGGACTGTGCTGCCCGGAAGAAGTACTCCCATGTTGACCTGGTGGTGATGATTGACGGGTTTGATGGGGAGAAAGGAGCGATTGTGGCTGGAAGCAGAGGTTACTTTCTGAAGGGCCCATTGGTGTTCCTGGAGCAAGCTCTCATCAATTACGCCCTCAGGATTCTGCATAGTAAGAGTTACAGCATGCTGTACACGCGCTTCTTCATGAGGAAAGAGGTCA]
[+] EMBL FR0056566 [GATTCGAGCACCTCCGGGAGATCGGGAACCTTCTGCACCCGTCTGTCCCCATCAGCAACGACGAGGATGCAGACAACAAGGTAGAGCGGACCTGGGGGGACTGTGCTGCCCGGAAGAAGTACTCCCATGTTGACCTGGTGGTGATGATTGACGGGTTTGATGGGGAGAAAGGAGCGATTGTGGCTGGAAGCAGAGGTTACTTTCTGAAGGGCCCATTGGTGTTCCTGGAGCAAGCTCTCATCAATTACGCCCTCAGGATTCTGCATAGTAAGAGTTACAGCATGCTGTACACGCGCTTCTTCATGAGGAAAGAGGTCA]
consensusID : consensus_2203#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[GGCGAGGCGGAGATTGTCCGCGAATGTCAAATGAAGAGGTTTAAAGATGTGACGCTGGCCGACAAATTGGTCGCTGCCGATACGGAATGGAGGAAATGTGCGTAAGCGTATTTTGATTCCAGCTGCTCTAGGCGCTCCATCAGCTAACCGGTTAGCGTCGGCTAACAGTACTGAAACTACTACGGTGTTGGTATTCTCGACCAAATATGTTATCGATCGATCCCGTCAGAATGCTACTTTATATTTTACTTCGAATATGTAGGTAGTTA]
[+] EMBL FR0058648 [GGCGAGGCGGAGATTGTCCGCGAATGTCAAATGAAGAGGTTTAAAGATGTGACGCTGGCCGACAAATTGGTCGCTGCCGATACGGAATGGAGGAAATGTGCGTAAGCGTATTTTGATTCCAGCTGCTCTAGGCGCTCCATCAGCTAACCGGTTAGCGTCGGCTAACAGTACTGAAACTACTACGGTGTTGGTATTCTCGACCAAATATGTTATCGATCGATCCCGTCAGAATGCTACTTTATATTTTACTTCGAATATGTAGGTAGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2203#0 CGGACGACTTGCAGTCATGGTGCTCGACTTGGACCTGTTTCGTACCGACAAGGGAGGCGA 60
consensus_2203#2 -------------------------------------------------------GGCGA 5
consensus_2203#1 ----------------------------------------------------------GA 2
**
consensus_2203#0 TCCGGAGATTGTCCGCGAATGTCAAGGGAAGAGGTTTAAAGATGTGACGCTGGTCGACAA 120
consensus_2203#2 GGCGGAGATTGTCCGCGAATGTCAAATGAAGAGGTTTAAAGATGTGACGCTGGCCGACAA 65
consensus_2203#1 TTCGAGCACC-TCCGGGAGATCGGGAACCTTCTGCACCCGTCTGTCCCCATCAGCAACGA 61
** * **** ** * *** * * * ** *
consensus_2203#0 ATTGGTCGCTGCCGATACGGAATGGAGGAAATGCCGCTTCACTGCAGAC-AACCTCAACA 179
consensus_2203#2 ATTGGTCGCTGCCGATACGGAATGGAGGAAATGT-GCGTAAGCGTATTTTGATTCCAGCT 124
consensus_2203#1 CGAGGATGCAGACAACAAGGTAGAGCGGACCTGGGGGGACTGTGCTGCCCGGAAGAAGTA 121
** ** * * * * ** * * *** ** * * *
consensus_2203#0 AAGTCAAGAACCTCTGCAGCAAGAGCATCGGGGAGAAAATGAAGAAGAAGGAACCGGTTG 239
consensus_2203#2 GCTCTAGGCGCTCCATCAGCTAACCGGTTAGCGTCGG--CTAACAGTACTGAAACTACTA 182
consensus_2203#1 CTCCCATGTTGACCTGGTG-GTGATGATTGACGGGTTTGATGGGGAGAAAGGAGCGATTG 180
* * * * * * * * * * *
consensus_2203#0 GAG--AGGATGAAACTCTGCCTGAAGAAGCGCAGGACCTGGAATCCGTAACAGCTGAAAC 297
consensus_2203#2 CGG--TGTTGGTATTCTCGACCAAATATGTTATCGATC--GATCCCGTCAGAAT------ 232
consensus_2203#1 TGGCTGGAAGCAGAGGTTACTTTCTGAAGGGCCCATTGGTGTTCCTGGAGCAAGCTCT-C 239
* * * * * * * *
consensus_2203#0 GTTAGCGACCCTGACAGTAGCCCAGATTAAGAAAGTG-CGGCTGCTGGTGGACGAGGCCA 356
consensus_2203#2 ----GCTACTTTATATTTTACTTCGAATATGTAGGT---AGTTA---------------- 269
consensus_2203#1 ATCAATTACGCCCTCAGGATTCTGCATAGTAAGAGTTACAGCATGCTGTACACGCGCTTC 299
** * ** *
consensus_2203#0 TTGGGAAAACTGACAGTGAAAGGGTGACACTGGAGGAAGAGCGATTCGAGCACCTCCGGG 416
consensus_2203#2 ------------------------------------------------------------
consensus_2203#1 TTCATGAGGAAAGAGGTCA----------------------------------------- 318
consensus_2203#0 AGATCGGGAACCTTCTGCACCCGTCTGTCCCCATCA 452
consensus_2203#2 ------------------------------------
consensus_2203#1 ------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |