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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 601 fasta sequence
[AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT-CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGGGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGTCGT]
[+] EMBL CA591183 [AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAAGAAACCTGCCTTTTAAAACGGTGTAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGTCGT]
[+] EMBL BU805062 [ TGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGACGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGATCCTGCCGCAGGAGGAGGAGGACGTGACA ]
[+] EMBL CA590164 [ CAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACTGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGG ]
consensusID : consensus_2204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[TAATGGCGGACTTCGACTACTACGACGATCGAGATGTGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGG]
[+] EMBL BU805685 [TAATGGCGGACTTCGACTACTACGACGATCGAGATGTGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2204#0 -AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCA 59
consensus_2204#1 TAATGGCGGACTTCGACTACTACGACGATCGAGAT-GTGCCTATGGAAGCTTCGGCGGCA 59
********************************** * **********************
consensus_2204#0 GCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGC 119
consensus_2204#1 GCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGC 119
************************************************************
consensus_2204#0 CGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGG 179
consensus_2204#1 CGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGG 179
************************************************************
consensus_2204#0 ACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAG 239
consensus_2204#1 ACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAG 239
************************************************************
consensus_2204#0 AAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAG-ATCTGGAGTCTCTAAAA 298
consensus_2204#1 AAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAA 299
************************************** * *****************
consensus_2204#0 GAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCA 358
consensus_2204#1 GAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCA 359
************************************************************
consensus_2204#0 GAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGAT 418
consensus_2204#1 GAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGAT 419
************************************************************
consensus_2204#0 GATGCAAAAGGAAAAGGAGGTAGTCGAGGATCTGCCGCAGGAGGAGGAGGACGTGACAAC 478
consensus_2204#1 GATGCAAAAGGTTATAGAGATGAT-GATTATATG-----GGAGGGCGGAGTCGAGGTGGC 473
*********** * *** * * ** ** ** ***** * * ** * *
consensus_2204#0 CGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGGGGGCGG 538
consensus_2204#1 GGCACAGGTGCTGG---------------------------------------------- 487
* * *
consensus_2204#0 AGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGT 598
consensus_2204#1 ------------------------------------------------------------
consensus_2204#0 CGT 601
consensus_2204#1 ---
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |