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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence
[CGCAACCATGCCCGGTGAAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGCGACTGGGTCCGGAACTGAATCAGACAGTGACGACTCTGTCCCAGAGCTGGAGGAACAGGACTCCGCACAGGCACAGGCACAGCAGGCTCAGCTGGCAGCAGCTGCTGAGATTGATGAAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAAAGAAGGCACGAGAAGCAATGTCAAAGCTCGGTCTCAGGCAGGTAACGGGGGTCACACGAGTCACGATTCGCAAGTCAAGGAACATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCCCGCGTCAGACACATACATCGTCTTTGGTGAAGCTAAGATCGAAGATCTTTCCCAGCAAGCTCAGCTGGGTGCGGCAGAGAAGTTCAAGGTCCAGGGAGAAGCTGTATCAAGCATCCAGGAAAACACACAGACGCCAACAGTACAGGAGGAGAGCGAAGAAGAGGAGGTTGATGAGACCGGCGTTGAGGTCAAGGACATCGAACTGGTCATGTCACAAGCCAACGTGTCACGGGCGAAGGCAATACGCGCCCTGAAGAACAACAACAACGACATCGTCAACGCCATCATGGAATTGACGATGTAGGGGGACTCTGGAAGAGTCGGGGTTGAAGAAAGGTTGCTGATTTAAGCTCATTTATACAATTTATTATACCTGAGGTGGGAATAA]
[+] EMBL FR0055527 [CGCAACCATGCCCGGTGAAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGCGACTGGATCCGGTACTGACTCAGACAGTGACGACTCTGTCCCAGAGCTGGCGGAACAGGACTCCGCACAGGCACAGGCACAGCAGGCTCAGCTGGTAGCAGCTGCTGAGATTGATGAAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAAAGAAGGCACGAGAAGCAATGTCAAAGCTCGGTCTCAGGCAGGTAACGGGGGTCACACGAGTCACGATTCGCAAGTCACAGAACATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCTCGCGTCAGACACATACATCGTCTTTGGTGGAGCTAAGATCGGAGATCTTTC ]
[+] EMBL FR0055371 [ AAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGCGACTGGGTCCGGAACTGAATCAGACAGTGACGACTCTGTCCCAGAGCTGGAGGAACAGGACTCCGCACAGACACAGACACAGCAGGCTCAGCTGGCAGCAGCTGCTGAGATTGATGAAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAAAGAATGCACGAGAAGCAATGTCAAAGCTCGGTCTCAGACAGGTAACGGGGGTCACACGAGTCACGATTCGCAAGTCAAGGAACATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCCCGCGGCAGACACATACATCGACTTTGGTGAAGCTAAGATCGAGGATCTTTCCCAGCAAGCTCAGCTGGGTGCGGCAG ]
[+] EMBL FR0056948 [ CATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCCCGCGTCAGACACATACATCGTCTTTGGTGAAGCTAAGATCGAAGATCTTTCCCAGCAAGCTCAGCTGGCTGCGGCAGAGAAGTTCAAGGTCCAGGGAGAAGCTGTATCAAGCATCCAGGAAAACACACAGACGCCAACAGTACAGGAGGAGAGCGAAGAAGAGGAGGTTGATGAGACCGGCGTTGAGGTCAAGGACATCGAACTGGTCATGTCACAAGCCAACGTGTCACGGGCGAAGGCAATACGCGCCCTGAAGAACAACAACAACGACATCGTCAACGCCATCATGGAATTGACGATGTAGGGGGACTCTGGAAGAGTCGGGGTTGAAGAAAGGTTGCTGATTTAAGCTCATTTATACAATTTATTATACCTGAGGTGGGAATAA]
consensusID : consensus_2206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGAGACTGTCAACAGGGCAGTCTCACATGGACAACCTTTAGAATCCTCTGATAGCCAGGGGAGTAGCTCTCTGAAAGAAGTTAGCATTCAGGCTACCAGTGACCAACCATGTGGTGTCCCTGATGCTCAAGAAAGTCCCGAGAAAGCTGAAGATATCGAGTCACCTGTTGTGCAGCAGGAGGCAACAGCTGACCCAGTAGGGTGTTCTACTGATCTGACTGTTCCTGGCAGCTGTGAGCCTCAAGCTAATGAAAAAAATGTGCTAACTACAGAGGCACATGTACATGAAAACAAGGAAGTGGCCCTCCAAGACACGGAGATTCCGGATGGGATGATCTCTGGAGGAA]
[+] EMBL FR0063046 [CAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGAGACTGTCAACAGGGCAGTCTCACATGGACAACCTTTAGAATCCTCTGATAGCCAGGGGAGTAGCTCTCTGAAAGAAGTTAGCATTCAGGCTACCAGTGACCAACCATGTGGTGTCCCTGATGCTCAAGAAAGTCCCGAGAAAGCTGAAGATATCGAGTCACCTGTTGTGCAGCAGGAGGCAACAGCTGACCCAGTAGGGTGTTCTACTGATCTGACTGTTCCTGGCAGCTGTGAGCCTCAAGCTAATGAAAAAAATGTGCTAACTACAGAGGCACATGTACATGAAAACAAGGAAGTGGCCCTCCAAGACACGGAGATTCCGGATGGGATGATCTCTGGAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2206#0 CGCAACCATGCCCGGTGAAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCA 60
consensus_2206#1 -----------------------CAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCA 37
*************************************
consensus_2206#0 GCCTCAAGTGGCGACTGGGTCCGGAACTGAATCAGACAGTGACGACTCTG-------TCC 113
consensus_2206#1 GCCTCAAGTGGAGACTGTCAACAGGGC--AGTCTCACATGGACAACCTTTAGAATCCTCT 95
*********** ***** * * * * ** *** *** ** * **
consensus_2206#0 CAGAGCTGGAGGAACAGGACTCCGCACAGGCACAGGCACAGCAGGCT--CAGCTGGCAGC 171
consensus_2206#1 GATAGCCAGGGGAGTAGCTCTCTG-AAAGAAGTTAGCATT-CAGGCTACCAGTGACCAAC 153
* *** * *** ** *** * * ** *** ****** *** ** *
consensus_2206#0 AGC-TGCTGAGATTGATG---AAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAA 227
consensus_2206#1 CATGTGGTGTCCCTGATGCTCAAGAAAGTCCCGAGAAAGCTGAAGATATCGAGTCACCTG 213
** ** ***** ***** * ***** ** * * * *
consensus_2206#0 AGAAGGCACGAGAAGCAA----TGTCAAAGCTCGGTCTCAGGCAGGTAACGGGGGTCACA 283
consensus_2206#1 TTGTGCAGCAGGAGGCAACAGCTGACCCAGTAGGGTGTTCTACTGATCTGACTGTTCCTG 273
* * ** **** ** * ** *** * * * * * **
consensus_2206#0 CGAGTCACGATTCGCAAGTCAAGGAACATCTTGTTCGTCATTACCAAACCAGACGTCTAC 343
consensus_2206#1 GCAGCTGTGAGCCTCAAGCTAATGAAAAAAATGTGC-TAACTACAGAGGCACATGTACAT 332
** ** * **** ** *** * *** * * * *** * ** * ** *
consensus_2206#0 AAGAGTCCCGCGTCAGACACATACATCGTCTTTGGTGAAGCTAAGATCGAAGATCTTTCC 403
consensus_2206#1 GAAAACAAGGAAGTGGCCCTCCAAGACAC----GGAGATTCCGGATGGGATGATCTCTGG 388
* * * * * * * ** ** * ** ***** *
consensus_2206#0 CAGCAAGCTCAGCTGGGTGCGGCAGAGAAGTTCAAGGTCCAGGGAGAAGCTGTATCAAGC 463
consensus_2206#1 AGGAA------------------------------------------------------- 393
* *
consensus_2206#0 ATCCAGGAAAACACACAGACGCCAACAGTACAGGAGGAGAGCGAAGAAGAGGAGGTTGAT 523
consensus_2206#1 ------------------------------------------------------------
consensus_2206#0 GAGACCGGCGTTGAGGTCAAGGACATCGAACTGGTCATGTCACAAGCCAACGTGTCACGG 583
consensus_2206#1 ------------------------------------------------------------
consensus_2206#0 GCGAAGGCAATACGCGCCCTGAAGAACAACAACAACGACATCGTCAACGCCATCATGGAA 643
consensus_2206#1 ------------------------------------------------------------
consensus_2206#0 TTGACGATGTAGGGGGACTCTGGAAGAGTCGGGGTTGAAGAAAGGTTGCTGATTTAAGCT 703
consensus_2206#1 ------------------------------------------------------------
consensus_2206#0 CATTTATACAATTTATTATACCTGAGGTGGGAATAA 739
consensus_2206#1 ------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |