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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[ACCCTTTCCTTCAGCTTACAGATGGCAAAAAGATCAAGTGCACGCTAAACGGCCACGAGTTTCCGTGCAACCTGCAGGAGCTTGAGAAGTTCACTCAAGGGAAGAAGTATGAGAAGCTGAGCGCTGCTGCAGACTTCAACTACAGCCAGTATGAGCCACATATCGTGGCAAGCACCAAACAGCCCAACCAGCTCTTCTGTAAACTGACCCTGAGACACCTCAACCGGCAGCCACATCACGTCCTGCGACATATTCACGGGAAACGTTTCAAGAAAGCCCTCTCCAAGTATGAGGACTGCGTGCAGAAAGGGATTGAATTCATCCCAGCTCGACTCATGCAGAAGAGGCCCAAAGACGCCAGGGAGGAAGTCAGTCGGGGGAGGACCTCGAAGCAGGGCAACGGCACGTGGGCGCCCTCTTCGAGCGAGGAGGACGGCGACTCGGAGGACAGCATGAGTGACCTCTACCCCTCCCACCTATTCACGCTAAAAAACCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGC]
[+] EMBL CA329885 [ACCCTTTCCTTCAGCTTACAGATGGCAAAAAGATCAAGTGCACGCTAAACGGCCACGAGTTTCCGTGCAACCTGCAGGAGCTTGAGAAGTTCACTCAAGGGAAGAAGTATGAGAAGCTGAGCGCTGCTGCAGACTTCAACTACAGCCAGTATGAGCCACATATCGTGGCAAGCACCAAACAGCCCAACCAGCTCTTCTGTAAACTGACCCTGAGACACCTCAACCGGCAGCCACATCACGTCCTGCGACATATTCACGGGAAACGTTTCAAGAAAGCCCTCTCCAAGTATGAGGACTGCGTGCAGAAAGGGATTGAATTCATCCCAGCTCGACTCATGCAGAAGAGGCCCAAAGACGCCAGGGAGGAAGTCAGTCGGGGGAGGACCTCGAAGCAGGGCAACGGCACGTGGGCGCCCTCTTCGAGCGAGGAGGACGGCGACTCGGAGGACAGCATGAGTGACCTCTACCCCTCCCACCTATTCACGCTAAAAAACCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGC]
consensusID : consensus_221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence
[GCTCTAATTCCAAGCAAACGCATCAGTTTACCGCGTGTTTCCGGTTCATTTTTGGAACGTTGTGCTCCCACAGCCCACCTATTCACGCTAAAAAGCCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGCACAAAAGCGCAGGGTGGCGGAACGCAGAAGAAACTCCGCAATAACCGCTGGAAATCTGGGCGGG]
[+] EMBL FR0056528 [GCTCTAATTCCAAGCAAACGCATCAGTTTACCGCGTGTTTCCGGTTCATTTTTGGAACGTTGTGCTCCCACAGCCCACCTATTCACGCTAAAAAGCCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGCACAAAAGCGCAGGGTGGCGGAACGCAGAAGAAACTCCGCAATAACCGCTGGAAATCTGGGCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_221#0 ACCCTTTCCTTCAGCTTACAGATGGCAAAAAGATCAAGTGCACGCTAAACGGCCACGAGT 60
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TTCCGTGCAACCTGCAGGAGCTTGAGAAGTTCACTCAAGGGAAGAAGTATGAGAAGCTGA 120
consensus_221#1 ------------------------------------------------------------
consensus_221#0 GCGCTGCTGCAGACTTCAACTACAGCCAGTATGAGCCACATATCGTGGCAAGCACCAAAC 180
consensus_221#1 ------------------------------------------------------------
consensus_221#0 AGCCCAACCAGCTCTTCTGTAAACTGACCCTGAGACACCTCAACCGGCAGCCACATCACG 240
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TCCTGCGACATATTCACGGGAAACGTTTCAAGAAAGCCCTCTCCAAGTATGAGGACTGCG 300
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TGCAGAAAGGGATTGAATTCATCCCAGCTCGACTCATGCAGAAGAGGCCCAAAGACGCCA 360
consensus_221#1 ------------------------------------------------------------
consensus_221#0 GGGAGGAAGTCAGTCGGGGGAGGACCTCGAAGCAGGGCAACGGCACGTGGGCGCCCTCTT 420
consensus_221#1 ---------------------------------GCTCTAATTCCAAGCAAACGCATCAGT 27
** ** * *** *
consensus_221#0 CGAGCGAGGAGGACGGCGACTCGGAGGACAGCATGAGTGACCTCTACCCCTCCCACCTAT 480
consensus_221#1 TTACCGCG--TGTTTCCGGTTC--ATTTTTGGAACGTTGTGCTCC-CACAGCCCACCTAT 82
* ** * * ** ** * * * ** *** * * *********
consensus_221#0 TCACGCTAAAAAACCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACG 540
consensus_221#1 TCACGCTAAAAAGCCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACG 142
************ ***********************************************
consensus_221#0 ACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGC- 599
consensus_221#1 ACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGCA 202
***********************************************************
consensus_221#0 ------------------------------------------------------------
consensus_221#1 CAAAAGCGCAGGGTGGCGGAACGCAGAAGAAACTCCGCAATAACCGCTGGAAATCTGGGC 262
consensus_221#0 ---
consensus_221#1 GGG 265
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |