cluster # 2214

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Takifugu rubripes
cluster # 2214 cluster # 2214 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2214#0 length = 540 sequences # 2

consensus_2214#1 length = 440 sequences # 1
consensus_2214#2 length = 331 sequences # 1

consensusID : consensus_2214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 540
fasta sequence

                              [GGAAAATGTGATTTTATCTATCTCTGCTATGAGACTTATGTGTGCAAGAAAGCGAGAAAGGCTAGTCGGTCTTTGTCCCCTGGCTCGGGCGGAAACTACAAACGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGAACGTCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAAATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCAGCCAACGGGCCTCTGTCTGTTCCTATGATGTCAGGA]

[+] EMBL CA332764             [GGAAAATGTGATTTTATCTATCTCTGCTATGAGACTTATGTGTGCAAGCAAGCACTAAAATTTAGTCGGTCTTTGT TTCTGGCTCGGGCGAAAACTACAAACGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCGTCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAAATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCAGCCAACGGGCCTCTGTCTGTTCCTATGATGTCAGGA]
[+] EMBL CA333326             [                                               aAAACCGAGCAAGGCTCGTCGGTCTTTGTCCCCTGGCTCGGGCGGAAACTACAAACGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGAACa                                                                                                                                                                                                                                                                                                                           ]




>consensus_2214#0
GGAAAATGTGATTTTATCTATCTCTGCTATGAGACTTATGTGTGCAAGAAAGCGAGAAAG
GCTAGTCGGTCTTTGTCCCCTGGCTCGGGCGGAAACTACAAACGTTACAATCGGTGAGGA
TTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCT
ATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGAACGTCTCCAGGTGGCATA
GTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCT
GTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGAT
CCAATGCACCAGATGCACAAAATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGG
ATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGA
GAACATGCCCCTAGCCCTGTCCCAGCCAACGGGCCTCTGTCTGTTCCTATGATGTCAGGA

consensusID : consensus_2214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [CGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCATCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGC]

[+] EMBL CA590645             [CGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCATCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGC]




>consensus_2214#1
CGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATG
TCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGA
CCATCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAAC
ATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCA
ACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAG
AAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGT
GGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCA
TCTCCCGTGGGAGAACATGC

consensusID : consensus_2214#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [CGGGACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTTCAAGTCCAATGGACCAACATTCACAAGGGTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCACCC]

[+] EMBL FR0061327            [CGGGACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTTCAAGTCCAATGGACCAACATTCACAAGGGTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCACCC]




>consensus_2214#2
CGGGACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATG
TCCACCCCGGATCCCCCTATGGGAGGGACACCCCCACCCTCCGCAGGCACCAACAGGATA
TTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAAT
GACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAG
TGGGATGGGACCACCTTCAAGTCCAATGGACCAACATTCACAAGGGTACCCATCTCCCGT
GGGAGAACATGCCCCTAGCCCTGTCCCACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2214#0      GGAAAATGTGATTTTATCTATCTCTGCTATGAGACTTATGTGTGCAAGAAAGCGAGAAAG 60
consensus_2214#1      ------------------------------------------------------------
consensus_2214#2      ------------------------------------------------------------
                                                                                  

consensus_2214#0      GCTAGTCGGTCTTTGTCCCCTGGCTCGGGCGGAAACTACAAACGTTACAATCGGTGAGGA 120
consensus_2214#1      ------------------------------------------CGTTACAATCGGTGAGGA 18
consensus_2214#2      ------------------------------------------------------------
                                                                                  

consensus_2214#0      TTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCT 180
consensus_2214#1      TTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCT 78
consensus_2214#2      ------------------------------------------------------------
                                                                                  

consensus_2214#0      ATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGAACGTCTCCAGGTGGCATA 240
consensus_2214#1      ATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCATCTCCAGGTGGCATA 138
consensus_2214#2      -------------------------------------CGGGACAATC---GGTGAGGATT 20
                                                           * ***   **    *   * ** 

consensus_2214#0      GTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCT 300
consensus_2214#1      GTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCT 198
consensus_2214#2      CAAATATCAACTATCGACACTTGTGTTTATTTGA-----GAGATGTCCACCCCGGATCCC 75
                        *    *** *   *   * * *  *   * *       * ***     ***    ** 

consensus_2214#0      GTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGAT 360
consensus_2214#1      GTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGAT 258
consensus_2214#2      ---CCTATGGGAG--GGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGAT 130
                         ***   ***   *********************************************

consensus_2214#0      CCAATGCACCAGATGCACAAA--------------------------------------- 381
consensus_2214#1      CCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGAT 318
consensus_2214#2      CCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGAT 190
                      *********************                                       

consensus_2214#0      ---------------ATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGA 426
consensus_2214#1      TCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGA 378
consensus_2214#2      TCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGA 250
                                     *********************************************

consensus_2214#0      CCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACAT 486
consensus_2214#1      CCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACAT 438
consensus_2214#2      CCACCTTCAAGTCCAATGGACCAACATTCACAAGGGTACCCATCTCCCGTGGGAGAACAT 310
                      ****** **************************** ************************

consensus_2214#0      GCCCCTAGCCCTGTCCCAGCCAACGGGCCTCTGTCTGTTCCTATGATGTCAGGA 540
consensus_2214#1      GC---------------------------------------------------- 440
consensus_2214#2      GCCCCTAGCCCTGTCCCACCC--------------------------------- 331
                      **

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)