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Takifugu rubripes
cluster # 2238 cluster # 2238       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2238#0 length = 632 sequences # 4  
 consensus_2238#1 length = 531 sequences # 1  
consensusID : consensus_2238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 632
fasta sequence 
                              [GTTGCTCATAAAACCGAAGCAAAATGACAATGAAACTGGCTTATTGGGACATTCGAGGGCTGGCCCAGCCGATCCGTCTGCTGCTGCAGTACACCGGCACCAAGTACGAGGACAAATTCTACGTTTGTGGTGAAGCGCCGGATTATGACAAAAGCTGCTGGTTTGATGAAAAACAGAAGCTTGGAATGGACTTTCCCAACCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACGAGCAGGTGCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGTGCTACAATCCCGAGTTTGACAAGATGAAACCAGGGTACCTTAAGATGCTGCCGGATGTACTGAAGCAGTTCTCCGCTTTCTTGGGCGAGAATAGATGGTTTGCGGGCGACAAGATCACCTTCGTGGACTTCATCATGTACGAGCTGCTGGACCAGCACAGGATGTTCCAGCCTTCCTGCCTCGACGACTTCAAGAACCTCAAAGATCTCCTAGATCGATTTGAGGCTCTGGAGGAGATCGCTGCCTACATGAAGTCAGACAGGTTC]

[+] EMBL CA330725             [GTTGCTCATAAAACCGAAGCAAAATGACAATGAAACTGGCTTATTGGGACATTCGAGGGCTGGCCCAGCCGATCCGTCTGCTGCTGCAGTACACCGGCACCAAGTACGAGGACAAATTCTACGTTTGTGGTGAAGCGCCGGATTATGACAAAAGCTGCTGGTTTGATGAAAAACAGAAGCTTGGAATGGACTTTCCCAACCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACGAGCAGGTGCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGTGCTACAATCCCGAGTTTGACAAGATGAAACCAGGGTACCTTAAGATGCTGCCGGATGTACTGAAGCAGTTCTCCGCTTTCTTGG                                                                                                                                                                                      ]
[+] EMBL FR0055306            [   GCTCATAAAACCGAAGCATCATGACAATGAAACTGGCTTATTGGGACATTCGAGGGCTGGCCCAGCCGATCCGTCTGCTGCTGCAGTACACCGGCACCAAGTACGAGGACAAATTCTACGTTTGTGGTGAAGCGCCGGATTATGACAAAAGCTGCTGGTTTGATGAAAAACAGAAGCTTGGAATGGACTTTCCCAACCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACGAGCACGTGCGCGTGGACATCATGGATAACCAGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGTGCTACAATCCCGAGTTTGACAAGATGACACCAGGGTACCTTAAGATGCTGCCGGATGTCCTGAAGCAGTTCTCCGCTTTCTTGGGCGACAATAGATGGTTTGC                                                                                                                                                                   ]
[+] EMBL CA330334             [        TAAAACCGAAGCAAAATGACAATGAAACTGGCTTATTGGGACATTCGAGGGCTGGCCCAGCCGATCCGTCTGCTGCTGCAGTACACCGGCACCAAGTACGAGGACAAATTCTACGTTTGTGGTGAAGCGCCGGATTATGACAAAAGCTGCTGGTTTGATGAAAAACAGAAGCTTGGAATGGACTTTCCCAACCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACGAGCAGGTGCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGTGCTACAATCCCGAGTTTGACAAGATGAAACCAGGGTACCTTAAGATGCTGCCGGATGTACTGAAGCAGTTCTCCGCTTTCTTGGGCGAGAATAAATGGTTTGCGGGCGACAAGATCACCTTCGTGGACTTCATCATGTACGAGCTGCTGGACCAGCACAGGATGTTCCAGCCTTCCTGCCTCGACGACTTCAAGAACCTCAAAGATCTCCTAGATCGATTTGAGGCTCTGGAGGAGATCGCTGCCTACATGAAGTCAGACAGGTTC]
[+] EMBL FR0064042            [         AAAACCGAAGCAAAATGACAATGAAACTTTTTTATTGGGACATTCGAGGGCTGGCCCAGCCGATCCGTCTGCTGCTGCAGTACACCGGCACCAAGTACGAGGACAAATTCTACGTTTGTGGTGAAGCGCCGGATTATGACAAAAGCTGCTGGTTTGATGAAAAACAGAAGCTTGGAATGGACTTTCCCAACCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACGAGCAGGTGCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGGGCTTCATTCCCGAGTTTGACAAGATGAAACCAGGGTACCTTAAGGGGCTGCC                                                                                                                                                                                                                      ]




>consensus_2238#0
GTTGCTCATAAAACCGAAGCAAAATGACAATGAAACTGGCTTATTGGGACATTCGAGGGC
TGGCCCAGCCGATCCGTCTGCTGCTGCAGTACACCGGCACCAAGTACGAGGACAAATTCT
ACGTTTGTGGTGAAGCGCCGGATTATGACAAAAGCTGCTGGTTTGATGAAAAACAGAAGC
TTGGAATGGACTTTCCCAACCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGA
GCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACG
AGCAGGTGCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGA
GGCTGTGCTACAATCCCGAGTTTGACAAGATGAAACCAGGGTACCTTAAGATGCTGCCGG
ATGTACTGAAGCAGTTCTCCGCTTTCTTGGGCGAGAATAGATGGTTTGCGGGCGACAAGA
TCACCTTCGTGGACTTCATCATGTACGAGCTGCTGGACCAGCACAGGATGTTCCAGCCTT
CCTGCCTCGACGACTTCAAGAACCTCAAAGATCTCCTAGATCGATTTGAGGCTCTGGAGG
AGATCGCTGCCTACATGAAGTCAGACAGGTTC

consensusID : consensus_2238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence 
                              [TGAAACTTGATTACTGGGACATTCGTGGGCTGGCCCAGCCAGTCCGCCTGGTTCTGGAGTACACAGGCACCGAGTATGAAAACAAGCTTTACACCTGTGGGGAAGCACCAGATTATGACAAAAGCTGCTGGACCGATGAGAAAAACAGACTGGACATGAACTTCGCCAATCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACGAGCAGGTCCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGTGCTACAATCCCGAGTTTGACAAGGTGAAGCTGGACTACCTGCAGCAGCTCCCAGAAACTCTGAGGCAGTTCTCAAACTTCCTGGGAAACAGGAAGTGGTTCGCTGGTGACAAGATCACCTTCGTGGACTTCATCATGTACGAGCTGCTGGCCCAGCACAGGATGTTCCAGCCTTCCTGCCTCGAACACTTCAGGA]

[+] EMBL FR0055502            [TGAAACTTGATTACTGGGACATTCGTGGGCTGGCCCAGCCAGTCCGCCTGGTTCTGGAGTACACAGGCACCGAGTATGAAAACAAGCTTTACACCTGTGGGGAAGCACCAGATTATGACAAAAGCTGCTGGACCGATGAGAAAAACAGACTGGACATGAACTTCGCCAATCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACGAGCAGGTCCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGTGCTACAATCCCGAGTTTGACAAGGTGAAGCTGGACTACCTGCAGCAGCTCCCAGAAACTCTGAGGCAGTTCTCAAACTTCCTGGGAAACAGGAAGTGGTTCGCTGGTGACAAGATCACCTTCGTGGACTTCATCATGTACGAGCTGCTGGCCCAGCACAGGATGTTCCAGCCTTCCTGCCTCGAACACTTCAGGA]




>consensus_2238#1
TGAAACTTGATTACTGGGACATTCGTGGGCTGGCCCAGCCAGTCCGCCTGGTTCTGGAGT
ACACAGGCACCGAGTATGAAAACAAGCTTTACACCTGTGGGGAAGCACCAGATTATGACA
AAAGCTGCTGGACCGATGAGAAAAACAGACTGGACATGAACTTCGCCAATCTTCCGTACT
TGGAGGACGGAGACAGGAAGATAGTTCAGAGCAACGCCATCATGAGATACATCGCCCGCA
AGCACAATCTGTGTGGAGAGACGGAGGACGAGCAGGTCCGCGTGGACATCATGGAGAACC
AGGGGATGGATTTCAGAAACGGCTTCGTGAGGCTGTGCTACAATCCCGAGTTTGACAAGG
TGAAGCTGGACTACCTGCAGCAGCTCCCAGAAACTCTGAGGCAGTTCTCAAACTTCCTGG
GAAACAGGAAGTGGTTCGCTGGTGACAAGATCACCTTCGTGGACTTCATCATGTACGAGC
TGCTGGCCCAGCACAGGATGTTCCAGCCTTCCTGCCTCGAACACTTCAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2238#0      GTTGCTCATAAAACCGAAGCAAAATGACAATGAAACTGGCTTATTGGGACATTCGAGGGC 60
consensus_2238#1      ------------------------------TGAAACTTGATTACTGGGACATTCGTGGGC 30
                                                    ******* * *** *********** ****

consensus_2238#0      TGGCCCAGCCGATCCGTCTGCTGCTGCAGTACACCGGCACCAAGTACGAGGACAAATTCT 120
consensus_2238#1      TGGCCCAGCCAGTCCGCCTGGTTCTGGAGTACACAGGCACCGAGTATGAAAACAAGCTTT 90
                      **********  **** *** * *** ******* ****** **** **  ****  * *

consensus_2238#0      ACGTTTGTGGTGAAGCGCCGGATTATGACAAAAGCTGCTGGTTTGATGAAAAACAGAAGC 180
consensus_2238#1      ACACCTGTGGGGAAGCACCAGATTATGACAAAAGCTGCTGGACCGATGAGAAAAACAGAC 150
                      **   ***** ***** ** *********************   ***** *** * *  *

consensus_2238#0      TTGGAATGGACTTTCCCAACCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGA 240
consensus_2238#1      TGGACATGAACTTCGCCAATCTTCCGTACTTGGAGGACGGAGACAGGAAGATAGTTCAGA 210
                      * *  *** ****  **** ****************************************

consensus_2238#0      GCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACG 300
consensus_2238#1      GCAACGCCATCATGAGATACATCGCCCGCAAGCACAATCTGTGTGGAGAGACGGAGGACG 270
                      ************************************************************

consensus_2238#0      AGCAGGTGCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGA 360
consensus_2238#1      AGCAGGTCCGCGTGGACATCATGGAGAACCAGGGGATGGATTTCAGAAACGGCTTCGTGA 330
                      ******* ****************************************************

consensus_2238#0      GGCTGTGCTACAATCCCGAGTTTGACAAGATGAAACCAGGGTACCTTAAGATGCTGCCGG 420
consensus_2238#1      GGCTGTGCTACAATCCCGAGTTTGACAAGGTGAAGCTGGACTACCTGCAGCAGCTCCCAG 390
                      ***************************** **** *  *  *****  **  *** ** *

consensus_2238#0      ATGTACTGAAGCAGTTCTCCGCTTTCTTGGGCGAGAATAGATGGTTTGCGGGCGACAAGA 480
consensus_2238#1      AAACTCTGAGGCAGTTCTCAAACTTCCTGGGAAACAGGAAGTGGTTCGCTGGTGACAAGA 450
                      *    **** *********    *** ****  * *  *  ***** ** ** *******

consensus_2238#0      TCACCTTCGTGGACTTCATCATGTACGAGCTGCTGGACCAGCACAGGATGTTCCAGCCTT 540
consensus_2238#1      TCACCTTCGTGGACTTCATCATGTACGAGCTGCTGGCCCAGCACAGGATGTTCCAGCCTT 510
                      ************************************ ***********************

consensus_2238#0      CCTGCCTCGACGACTTCAAGAACCTCAAAGATCTCCTAGATCGATTTGAGGCTCTGGAGG 600
consensus_2238#1      CCTGCCTCGAACACTTCAGGA--------------------------------------- 531
                      **********  ****** **                                       

consensus_2238#0      AGATCGCTGCCTACATGAAGTCAGACAGGTTC 632
consensus_2238#1      --------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)