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Takifugu rubripes
cluster # 2242 cluster # 2242       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2242#0 length = 605 sequences # 4  
 consensus_2242#1 length = 155 sequences # 1  
consensusID : consensus_2242#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 605
fasta sequence 
                              [CAGCCGGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCTGGAAACTTTATTTTAGGTGCACCACCGACGGGAGTGGCCGATCGGACCGCCGCTCTTTTTGGGAAATCTTGTGCGTTTTTAACACTTCTGTCGTGGCCGTGGG-TGATGCTGGGAGTGG-CTGGAATGACGGGCAGCATTGCTAATGCCCTGGCCAACGCGACCTGCGAGAGGTGCAAGAGCGGCTTTGCTGCCACGGAGAAGATCGTCAACAGCAACGGAGAGCTGTACCATGAGCAGTGCTTCGTGTGCGCCCAGTGCTTCCAGCAGTTCCCAGAGGGGCTCTTCTATGAGTTCGA-GGGGAGGAAATACTGCGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATCGGTCGCGTCATTAAGGCCATGAACAACAGCTGGCACCCCGACTGCTTCTGCTGCGACATTTGCCAGGCCGTGCTTGCAGACGTGGGCTTCGTCAAGAACGCCGGCAGGCACCTGTGCCGGCCGTGCCACAACCGCGAGAAAGCCCGCGGCCTGGGCAAGTACATCTGCCAGAAGTGTCACGCCATCATCGAAGAG]

[+] EMBL CA330786             [CAGCCGGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCTGGAAACTTTATTTTAGGTGCACCACCGACGGGAGTGGCCGATCGGACCGCCGCTCTTTTTGGGAAATCTTGTGCGTTTTTAACACTTCTGTCGTGGCCGTGGG TGATGCTGGGAGTGG CTGGAATGACGGGCAGCATTGCTAATGCCCTGGCCAACGCGACCTGCGAGAGGTGCAAGAGCGGCTTTGCTGCCACGGAGAATATCGTCAACAGCAACGGAGAGCTGTACCATGAGCAGTGCTTCGTGTGCGCCCAGTGCTTCCAGCAGTTCCCAGAGGGGCTCTTCTATGAGTTCGA GGGGAGGAAATACTGCGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATCGGTCGCGTCATTAAGGCCATGAACAACAGCTGGCACCCCGACTGCTTCTGCTGCGACATTTGCCAGGCCGTGCTTGCAGACGTGGGCTTCGTCAAGAACGCCGGCAGGCACCTGTGCCGGCCGTGCCACAACCGCGAGAAAGCCCGCGGCCTGGGCAAGTACATCTGCCAGAAGTGTCACGCCATCATCGAAGAG]
[+] EMBL CA330837             [     GGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCTGGAAACTTTATTTTAGGTGCACCACCGACGGGAGTGGCCGATCGGACCGCCGCTCTTTTTGGGAAATCTTGTGCGTTTTTAACACTTCTGTCGTGGCCGTGGG TGATGCTGGGAGTGG CTGGAATGACGGGCAGCATTGCTAATGCCCTGGCCAACGCGACCTGCGAGAGGTGCAAGAGCGGCTTTGCTGCCACGGAGAAGATCGTCAACAGCAACGGAGAGCTGTACCATGAGCAGTGCTTCGTGTGCGCCCAGTGCTTCCAGCAGTTCCCAGAGGGGCTCTTCTATGAGTTCGA GGGGAGGAAATACTGCGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATCGGTCGCGTCATTAAGGCCATGAACAACAGCTGGCACCCCGACTGCTT                                                                                                                                                    ]
[+] EMBL FR0058289            [                                                                                                TTGGGAAATCTTGTGCGTTTTTAACACTTCTGTCGTGGCCGGGGG TGATGCTGGGAGT G CTGGAATGAC GGCAGCATTGCTAATGCCCT GCCAACGCGACCTGCGAGAGG GCAAGAGCGGCTTTGCTGCCACGGAGAAGATCGTCAACAGCAACGGAGAGCTGTACCATGAGCAGTGCTTCGTGTGCGCCCAGTGCTTCCAGCAGTTCCCAGAGGGGCTCTTCTATGAGTTCGA GGGGAGGAAATACTGCGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATCGGTCGCGTCATTAAGGCCATGAACAACAGCTGGCACCCCGACTGCTTCTG                                                                                                                                                 ]
[+] EMBL FR0061893            [                                                                                                           TGTGCGTTTTTAACACTTCTGTCGGGGGGGCGGGTTTATGCGGGGAGTGGNCTGCAATGACGGGCAGCATTGCTAATGCCCTGGCCAACGCGACCTGCGAGAGGTGCAAGAGCGGCTTTGCTGCCACGGAGAAGATCGTCAACAGCAACGGAGAGCTGTACCATGAGCAGTGCTTCGTGTGCGCCCAGTGCTTCCAGCAGTTCCCAGAGGGGCTCTTCTATGAGTTCGAGGGGGAGGAGTAGCTGCGAACATGACTTCCAGATGCTCTTTGCCCCTTGGCTGCACC                                                                                                                                                                                                                       ]




>consensus_2242#0
CAGCCGGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCTGGAAACTTTATTTTAGGTGCAC
CACCGACGGGAGTGGCCGATCGGACCGCCGCTCTTTTTGGGAAATCTTGTGCGTTTTTAA
CACTTCTGTCGTGGCCGTGGGTGATGCTGGGAGTGGCTGGAATGACGGGCAGCATTGCTA
ATGCCCTGGCCAACGCGACCTGCGAGAGGTGCAAGAGCGGCTTTGCTGCCACGGAGAAGA
TCGTCAACAGCAACGGAGAGCTGTACCATGAGCAGTGCTTCGTGTGCGCCCAGTGCTTCC
AGCAGTTCCCAGAGGGGCTCTTCTATGAGTTCGAGGGGAGGAAATACTGCGAACATGACT
TCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATCGGTCGCGTCA
TTAAGGCCATGAACAACAGCTGGCACCCCGACTGCTTCTGCTGCGACATTTGCCAGGCCG
TGCTTGCAGACGTGGGCTTCGTCAAGAACGCCGGCAGGCACCTGTGCCGGCCGTGCCACA
ACCGCGAGAAAGCCCGCGGCCTGGGCAAGTACATCTGCCAGAAGTGTCACGCCATCATCG
AAGAG

consensusID : consensus_2242#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence 
                              [GTGTCTAGTATGCAGATAAAGTCAGTAGATTTTAGGGACGACAGAAACAAAGAACATTTATTTAAACTTCTCTGGGCTCAACCGAGGGGGGGTGGGGGTCCGAGGCGGCTGCCAGCTCAGCCGGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCT]

[+] EMBL CA589970             [GTGTCTAGTATGCAGATAAAGTCAGTAGATTTTAGGGACGACAGAAACAAAGAACATTTATTTAAACTTCTCTGGGCTCAACCGAGGGGGGGTGGGGGTCCGAGGCGGCTGCCAGCTCAGCCGGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCT]




>consensus_2242#1
GTGTCTAGTATGCAGATAAAGTCAGTAGATTTTAGGGACGACAGAAACAAAGAACATTTA
TTTAAACTTCTCTGGGCTCAACCGAGGGGGGGTGGGGGTCCGAGGCGGCTGCCAGCTCAG
CCGGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2242#0      CAGCCGGCTCGCCTGCAGGGAGGAACCGGGGCGGCCCTGGAAACTTTATTTTAGGTGCAC 60
consensus_2242#1      ------------------------------------------------------------
                                                                                  

consensus_2242#0      CACCGACGGGAGTGGCCGATCGGACCGCCGCTCTTTTTGGGAAATCTTGTGCGTTTTTAA 120
consensus_2242#1      ----------------------------------------------------GTGTCTAG 8
                                                                          ** * ** 

consensus_2242#0      CACTTCTGTCGTGGCCGTGGGTGATGCTGGGAGTGGCTGGAATGACGGGCAGCATTGCTA 180
consensus_2242#1      TATGCAGATAAAGTCAGTAG---ATTTTAGGGACGACAGAAACAAAGAACA--TTTATTT 63
                       *      *   * * ** *   **  * **   * * * **  * *  **   **  * 

consensus_2242#0      ATGCCCTGGCCAACGCGACCTGCGAGAGGTGCAAGAGCGGCTTTGCTGCCA-CGGAGAAG 239
consensus_2242#1      AAACTTCTCTGGGCTCAACCGAGGGGGGGTGGGGGTCCGAGGCGGCTGCCAGCTCAGCCG 123
                      *  *         * * ***   * * ****   *  **     ******* *  **  *

consensus_2242#0      ATCGTCAACAGCAACGGAGAGCTGTACCATGAGCAGTGCTTCGTGTGCGCCCAGTGCTTC 299
consensus_2242#1      GC--TCGCCTGCAGGGAGGAACCG------GGGCGGCCCT-------------------- 155
                          **  * ***  *  ** * *      * ** *  **                    

consensus_2242#0      CAGCAGTTCCCAGAGGGGCTCTTCTATGAGTTCGAGGGGAGGAAATACTGCGAACATGAC 359
consensus_2242#1      ------------------------------------------------------------
                                                                                  

consensus_2242#0      TTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATCGGTCGCGTC 419
consensus_2242#1      ------------------------------------------------------------
                                                                                  

consensus_2242#0      ATTAAGGCCATGAACAACAGCTGGCACCCCGACTGCTTCTGCTGCGACATTTGCCAGGCC 479
consensus_2242#1      ------------------------------------------------------------
                                                                                  

consensus_2242#0      GTGCTTGCAGACGTGGGCTTCGTCAAGAACGCCGGCAGGCACCTGTGCCGGCCGTGCCAC 539
consensus_2242#1      ------------------------------------------------------------
                                                                                  

consensus_2242#0      AACCGCGAGAAAGCCCGCGGCCTGGGCAAGTACATCTGCCAGAAGTGTCACGCCATCATC 599
consensus_2242#1      ------------------------------------------------------------
                                                                                  

consensus_2242#0      GAAGAG 605
consensus_2242#1      ------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)